{ "type": "genome", "identifier": "GCF_018760365.1", "organism": "Pseudooceanicola endophyticus", "title": "Pseudooceanicola endophyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Life sciences Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018760365.1", "bioproject": "PRJNA224116", "biosample": "SAMN19473484", "wgs_master": "JAHIAB000000000.1", "refseq_category": "reference genome", "taxid": "2841273", "species_taxid": "2841273", "organism_name": "Pseudooceanicola endophyticus", "infraspecific_name": "strain=CBS1P-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/07", "asm_name": "ASM1876036v1", "asm_submitter": "Life sciences Institute", "gbrs_paired_asm": "GCA_018760365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/760/365/GCF_018760365.1_ASM1876036v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5228846", "genome_size_ungapped": "5228766", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018760365.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4979", "protein_coding_gene_count": "4863", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-07", "dateModified": "2021-06-07", "datePublished": "2021-06-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudooceanicola endophyticus" ], "sample_taxid": [ "2841273" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guangxi" ], "sample_host_location_id": [], "data_size": "1.423 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5228846", "Number of Sequences": "46", "Longest Sequences (bp)": "743130", "N50 (bp)": "287372", "Gap Ratio (%)": "0.001530", "GCcontent (%)": "67.3", "Number of CDSs": "4957", "Average Protein Length": "314.7", "Coding Ratio (%)": "89.5", "Number of rRNAs": "6", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudooceanicola endophyticus", "strain": "strain=CBS1P-1", "accession": "GCA_018760365.1", "taxid": 2841273, "species_taxid": 2841273, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1713, "total_fragments": 1720, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=CGMCC 1.12662", "accession": "GCA_900215355.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 81.7866, "matched_fragments": 767, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=Ar-45", "accession": "GCA_002786285.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 81.7511, "matched_fragments": 785, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=LMG 23705", "accession": "GCA_002786295.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 81.3391, "matched_fragments": 817, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=CECT 7751", "accession": "GCA_900172385.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 81.2497, "matched_fragments": 824, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 79.847, "matched_fragments": 636, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=CGMCC 1.6293", "accession": "GCA_014645095.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 79.8439, "matched_fragments": 642, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger bermudensis", "strain": "strain=HTCC2601", "accession": "GCA_000153725.1", "taxid": 344736, "species_taxid": 344736, "relation_to_type": "type", "validated": true, "ani": 79.5358, "matched_fragments": 668, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola onchidii", "strain": "strain=XY-99", "accession": "GCA_004959925.1", "taxid": 2562279, "species_taxid": 2562279, "relation_to_type": "type", "validated": true, "ani": 79.459, "matched_fragments": 561, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 78.8599, "matched_fragments": 562, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": 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540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.295, "matched_fragments": 472, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificitalea manganoxidans", "strain": "strain=DY25", "accession": "GCA_002504165.1", "taxid": 1411902, "species_taxid": 1411902, "relation_to_type": "type", "validated": true, "ani": 77.8061, "matched_fragments": 399, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia rufa", "strain": "strain=MOLA 401", "accession": "GCA_000743715.1", "taxid": 1530186, "species_taxid": 1530186, "relation_to_type": "type", "validated": true, "ani": 77.7763, "matched_fragments": 374, "total_fragments": 1720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius gelatinovorus", "strain": "strain=CECT 4357", "accession": "GCA_001458355.1", "taxid": 53501, "species_taxid": 53501, "relation_to_type": 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