{
    "type": "genome",
    "identifier": "GCF_018835585.1",
    "organism": "Pelorhabdus rhamnosifermentans",
    "title": "Pelorhabdus rhamnosifermentans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University Konstanz",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018835585.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN19287460",
        "wgs_master": "JAHGVE000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2772457",
        "species_taxid": "2772457",
        "organism_name": "Pelorhabdus rhamnosifermentans",
        "infraspecific_name": "strain=BoRhaA",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/10",
        "asm_name": "ASM1883558v1",
        "asm_submitter": "University Konstanz",
        "gbrs_paired_asm": "GCA_018835585.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/835/585/GCF_018835585.1_ASM1883558v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5250445",
        "genome_size_ungapped": "5250345",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "214",
        "contig_count": "214",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018835585.1-RS_2024_09_29",
        "annotation_date": "2024-09-29",
        "total_gene_count": "5327",
        "protein_coding_gene_count": "5143",
        "non_coding_gene_count": "84",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-10",
    "dateModified": "2021-06-10",
    "datePublished": "2021-06-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pelorhabdus rhamnosifermentans"
        ],
        "sample_taxid": [
            "2772457"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Upper Lake Constance near Mainau island"
        ],
        "sample_host_location_id": [],
        "data_size": "1.495 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5250445",
        "Number of Sequences": "214",
        "Longest Sequences (bp)": "681635",
        "N50 (bp)": "149569",
        "Gap Ratio (%)": "0.001905",
        "GCcontent (%)": "40.8",
        "Number of CDSs": "5155",
        "Average Protein Length": "287.4",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pelorhabdus rhamnosifermentans",
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                "accession": "GCA_018835585.1",
                "taxid": 2772457,
                "species_taxid": 2772457,
                "relation_to_type": "type",
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                "ani": 100.0,
                "matched_fragments": 1700,
                "total_fragments": 1703,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sporomusa acidovorans",
                "strain": "strain=DSM 3132",
                "accession": "GCA_002257695.1",
                "taxid": 112900,
                "species_taxid": 112900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3791,
                "matched_fragments": 85,
                "total_fragments": 1703,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporomusa acidovorans",
                "strain": "strain=Mol",
                "accession": "GCA_900101845.1",
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                "species_taxid": 112900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2688,
                "matched_fragments": 83,
                "total_fragments": 1703,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomusa anaerophila",
                "strain": "strain=MMFC1",
                "accession": "GCA_003966895.1",
                "taxid": 1930071,
                "species_taxid": 1930071,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0777,
                "matched_fragments": 51,
                "total_fragments": 1703,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_018835585.1",
                "gtdb_species": "s__Pelorhabdus rhamnosifermentans",
                "ani": 100.0,
                "matched_fragments": 1700,
                "total_fragments": 1703,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__UMGS1260;f__UMGS1260;g__Pelorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000725345.1",
                "gtdb_species": "s__Pelosinus sp000725345",
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                "matched_fragments": 119,
                "total_fragments": 1703,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__Pelosinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017889705.1",
                "gtdb_species": "s__Sporomusa sp017889705",
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                "matched_fragments": 72,
                "total_fragments": 1703,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900550105.1",
                "gtdb_species": "s__UMGS1260 sp900550105",
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                "matched_fragments": 118,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__UMGS1260;f__UMGS1260;g__UMGS1260",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001298735.1",
                "gtdb_species": "s__CYSP01 sp001298735",
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                "total_fragments": 1703,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__CYSP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017889585.1",
                "gtdb_species": "s__CTSoil-075 sp017889585",
                "ani": 76.3558,
                "matched_fragments": 62,
                "total_fragments": 1703,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__CTSoil-075",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003966895.1",
                "gtdb_species": "s__Methylomusa anaerophila",
                "ani": 76.0264,
                "matched_fragments": 50,
                "total_fragments": 1703,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Methylomusa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Pelorhabdus",
        "rhamnosifermentans"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}