{
    "type": "genome",
    "identifier": "GCF_018854015.1",
    "organism": "Igneacidithiobacillus copahuensis",
    "title": "Igneacidithiobacillus copahuensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Fundacion Ciencia y Vida",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018854015.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14545384",
        "wgs_master": "JAAXYO000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2724909",
        "species_taxid": "2724909",
        "organism_name": "Igneacidithiobacillus copahuensis",
        "infraspecific_name": "strain=VAN18-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/11",
        "asm_name": "ASM1885401v1",
        "asm_submitter": "Fundacion Ciencia y Vida",
        "gbrs_paired_asm": "GCA_018854015.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/854/015/GCF_018854015.1_ASM1885401v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2778422",
        "genome_size_ungapped": "2778422",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "202",
        "contig_count": "202",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018854015.1-RS_2024_07_29",
        "annotation_date": "2024-07-29",
        "total_gene_count": "2883",
        "protein_coding_gene_count": "2779",
        "non_coding_gene_count": "52",
        "pubmed_id": "34007059"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-11",
    "dateModified": "2021-06-11",
    "datePublished": "2021-06-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Igneacidithiobacillus copahuensis"
        ],
        "sample_taxid": [
            "2724909"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Argentina: Neuquen"
        ],
        "sample_host_location_id": [],
        "data_size": "0.795 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2778422",
        "Number of Sequences": "202",
        "Longest Sequences (bp)": "240285",
        "N50 (bp)": "90130",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.5",
        "Number of CDSs": "2714",
        "Average Protein Length": "304.8",
        "Coding Ratio (%)": "89.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Acidithiobacillus caldus",
                "strain": "strain=ATCC 51756",
                "accession": "GCA_000175575.2",
                "taxid": 33059,
                "species_taxid": 33059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6338,
                "matched_fragments": 158,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus ferridurans",
                "strain": "strain=ATCC 33020",
                "accession": "GCA_018854555.1",
                "taxid": 1232575,
                "species_taxid": 1232575,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4402,
                "matched_fragments": 100,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus caldus",
                "strain": "strain=DSM 8584",
                "accession": "GCA_018853615.1",
                "taxid": 33059,
                "species_taxid": 33059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3387,
                "matched_fragments": 154,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus caldus",
                "strain": "strain=KU",
                "accession": "GCA_018853545.1",
                "taxid": 33059,
                "species_taxid": 33059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.315,
                "matched_fragments": 152,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus sulfuriphilus",
                "strain": "strain=CJ-2",
                "accession": "GCA_003721225.1",
                "taxid": 1867749,
                "species_taxid": 1867749,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2968,
                "matched_fragments": 119,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus ferridurans",
                "strain": "strain=JCM 18981",
                "accession": "GCA_003966655.1",
                "taxid": 1232575,
                "species_taxid": 1232575,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.216,
                "matched_fragments": 107,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus ferrianus",
                "strain": "strain=MG",
                "accession": "GCA_010378095.1",
                "taxid": 2678518,
                "species_taxid": 2678518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1096,
                "matched_fragments": 115,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus ferrooxidans",
                "strain": "strain=ATCC 23270",
                "accession": "GCA_000021485.1",
                "taxid": 920,
                "species_taxid": 920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0123,
                "matched_fragments": 111,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermithiobacillus tepidarius",
                "strain": "strain=DSM 3134",
                "accession": "GCA_000423825.1",
                "taxid": 929,
                "species_taxid": 929,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4761,
                "matched_fragments": 73,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018854025.1",
                "gtdb_species": "s__UBA2486 sp018854025",
                "ani": 99.9822,
                "matched_fragments": 853,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__UBA2486",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "99.39",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002341825.1",
                "gtdb_species": "s__UBA2486 sp002341825",
                "ani": 78.0128,
                "matched_fragments": 189,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__UBA2486",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018853465.1",
                "gtdb_species": "s__Acidithiobacillus sp018853465",
                "ani": 77.7391,
                "matched_fragments": 111,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000175575.2",
                "gtdb_species": "s__Acidithiobacillus_A caldus",
                "ani": 77.6461,
                "matched_fragments": 161,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "98.61",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_003721225.1",
                "gtdb_species": "s__Acidithiobacillus_B sulfuriphilus",
                "ani": 77.2744,
                "matched_fragments": 120,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003966655.1",
                "gtdb_species": "s__Acidithiobacillus ferridurans",
                "ani": 77.194,
                "matched_fragments": 108,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "97.49",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_010378095.1",
                "gtdb_species": "s__Acidithiobacillus ferrianus",
                "ani": 77.09,
                "matched_fragments": 116,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000021485.1",
                "gtdb_species": "s__Acidithiobacillus ferrooxidans",
                "ani": 76.9929,
                "matched_fragments": 112,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_015100155.1",
                "gtdb_species": "s__Acidithiobacillus sp015100155",
                "ani": 76.7587,
                "matched_fragments": 87,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018854495.1",
                "gtdb_species": "s__Acidithiobacillus ferrooxidans_C",
                "ani": 76.7393,
                "matched_fragments": 110,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018853935.1",
                "gtdb_species": "s__Acidithiobacillus ferrivorans",
                "ani": 76.7392,
                "matched_fragments": 104,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.97",
                "min_intra_species_ani": "95.59",
                "mean_intra_species_af": "0.71",
                "min_intra_species_af": "0.67",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Igneacidithiobacillus",
        "copahuensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}