{
    "type": "genome",
    "identifier": "GCF_018854495.1",
    "organism": "Acidithiobacillus ferruginosus",
    "title": "Acidithiobacillus ferruginosus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Fundacion Ciencia y Vida",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018854495.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14556242",
        "wgs_master": "JABBDR000000000.1",
        "refseq_category": "reference genome",
        "taxid": "3063951",
        "species_taxid": "3063951",
        "organism_name": "Acidithiobacillus ferruginosus",
        "infraspecific_name": "strain=CF3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/11",
        "asm_name": "ASM1885449v1",
        "asm_submitter": "Fundacion Ciencia y Vida",
        "gbrs_paired_asm": "GCA_018854495.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/854/495/GCF_018854495.1_ASM1885449v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3011393",
        "genome_size_ungapped": "3011393",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "310",
        "contig_count": "310",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018854495.1-RS_2024_07_29",
        "annotation_date": "2024-07-29",
        "total_gene_count": "3262",
        "protein_coding_gene_count": "3096",
        "non_coding_gene_count": "52",
        "pubmed_id": "34007059"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-11",
    "dateModified": "2021-06-11",
    "datePublished": "2021-06-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acidithiobacillus ferruginosus"
        ],
        "sample_taxid": [
            "3063951"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Idaho"
        ],
        "sample_host_location_id": [],
        "data_size": "0.862 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "3011393",
        "Number of Sequences": "310",
        "Longest Sequences (bp)": "111653",
        "N50 (bp)": "21030",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.7",
        "Number of CDSs": "2881",
        "Average Protein Length": "281.8",
        "Coding Ratio (%)": "80.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Acidithiobacillus ferrooxidans",
                "strain": "strain=ATCC 23270",
                "accession": "GCA_000021485.1",
                "taxid": 920,
                "species_taxid": 920,
                "relation_to_type": "type",
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                "ani": 94.4402,
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                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus ferridurans",
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                "accession": "GCA_003966655.1",
                "taxid": 1232575,
                "species_taxid": 1232575,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.2234,
                "matched_fragments": 644,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus ferridurans",
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                "accession": "GCA_018854555.1",
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                "species_taxid": 1232575,
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                "validated": true,
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                "matched_fragments": 596,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus ferriphilus",
                "strain": "strain=DSM 100412",
                "accession": "GCA_018854775.1",
                "taxid": 1689834,
                "species_taxid": 1689834,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0902,
                "matched_fragments": 437,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus ferrianus",
                "strain": "strain=MG",
                "accession": "GCA_010378095.1",
                "taxid": 2678518,
                "species_taxid": 2678518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1124,
                "matched_fragments": 455,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_018854495.1",
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                "ani": 100.0,
                "matched_fragments": 871,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000021485.1",
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                "matched_fragments": 654,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
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                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.87",
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                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_003966655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "97.49",
                "mean_intra_species_af": "0.87",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_018853935.1",
                "gtdb_species": "s__Acidithiobacillus ferrivorans",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.97",
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                "min_intra_species_af": "0.67",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_018854775.1",
                "gtdb_species": "s__Acidithiobacillus ferriphilus",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
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                "mean_intra_species_af": "0.81",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_010378095.1",
                "gtdb_species": "s__Acidithiobacillus ferrianus",
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                "matched_fragments": 454,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": 0.066,
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        "growth_tmp": 31.057,
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        "coding_genes": 2959.333,
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        "tRNA_genes": 55.133,
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        "motility": 1.0,
        "range_salinity": 1.0,
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        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": 0.666,
        "thermophilic_range_tmp": 0.333,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Acidithiobacillus",
        "ferruginosus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}