{ "type": "genome", "identifier": "GCF_018860155.1", "organism": "Nocardia albiluteola", "title": "Nocardia albiluteola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018860155.1", "bioproject": "PRJNA224116", "biosample": "SAMN19554997", "wgs_master": "JAHKNI000000000.1", "refseq_category": "reference genome", "taxid": "2842303", "species_taxid": "2842303", "organism_name": "Nocardia albiluteola", "infraspecific_name": "strain=NEAU-G5", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/12", "asm_name": "ASM1886015v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_018860155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/860/155/GCF_018860155.1_ASM1886015v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9588249", "genome_size_ungapped": "9588169", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018860155.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "8604", "protein_coding_gene_count": "8367", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-12", "dateModified": "2021-06-12", "datePublished": "2021-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia albiluteola" ], "sample_taxid": [ "2842303" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Mudanjiang" ], "sample_host_location_id": [], "data_size": "2.623 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9588249", "Number of Sequences": "47", "Longest Sequences (bp)": "1272805", "N50 (bp)": "507066", "Gap Ratio (%)": "0.000834", "GCcontent (%)": "68.0", "Number of CDSs": "8639", "Average Protein Length": "321.8", "Coding Ratio (%)": "87.0", "Number of rRNAs": "4", "Number of tRNAs": "69", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia albiluteola", "strain": "strain=NEAU-G5", "accession": "GCA_018860155.1", "taxid": 2842303, "species_taxid": 2842303, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3123, "total_fragments": 3169, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardia jiangxiensis", "strain": "strain=NBRC 101359", "accession": "GCA_000308615.1", "taxid": 282685, "species_taxid": 282685, "relation_to_type": "type", "validated": true, "ani": 82.9823, "matched_fragments": 1660, "total_fragments": 3169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia miyunensis", "strain": "strain=NBRC 108239", "accession": "GCA_001613065.1", "taxid": 282684, "species_taxid": 282684, "relation_to_type": "type", "validated": true, "ani": 82.823, "matched_fragments": 1631, "total_fragments": 3169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia coffeae", "strain": "strain=CA2R105", "accession": "GCA_019890715.1", "taxid": 2873381, "species_taxid": 2873381, "relation_to_type": "type", "validated": true, "ani": 82.7704, "matched_fragments": 1686, "total_fragments": 3169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia macrotermitis", "strain": "strain=RB20", "accession": "GCA_009604405.1", "taxid": 2585198, "species_taxid": 2585198, "relation_to_type": "type", "validated": true, "ani": 82.6909, "matched_fragments": 1520, "total_fragments": 3169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia vaccinii", "strain": "strain=NBRC 15922", "accession": "GCA_001613305.1", "taxid": 1822, "species_taxid": 1822, "relation_to_type": "type", "validated": true, "ani": 82.4008, "matched_fragments": 1515, "total_fragments": 3169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia terpenica", "strain": "strain=IFM 0706", "accession": "GCA_013186535.1", "taxid": 455432, "species_taxid": 455432, "relation_to_type": "type", "validated": true, "ani": 81.9086, "matched_fragments": 1345, "total_fragments": 3169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia mexicana", "strain": "strain=DSM 44952", "accession": "GCA_003350525.1", "taxid": 279262, "species_taxid": 279262, "relation_to_type": "type", "validated": true, "ani": 81.7381, "matched_fragments": 1399, "total_fragments": 3169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia mexicana", "strain": "strain=NBRC 108244", "accession": "GCA_001613165.1", "taxid": 279262, "species_taxid": 279262, "relation_to_type": "type", "validated": true, "ani": 81.62, "matched_fragments": 1362, "total_fragments": 3169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia transvalensis", "strain": "strain=NBRC 15921", "accession": "GCA_000308875.1", "taxid": 37333, "species_taxid": 37333, "relation_to_type": "type", "validated": true, "ani": 81.4868, "matched_fragments": 1359, "total_fragments": 3169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia nova", "strain": "strain=NBRC 15556", "accession": "GCA_001613005.1", "taxid": 37330, "species_taxid": 37330, 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_019038435.1", "gtdb_species": "s__Nocardia sp019038435", "ani": 83.0951, "matched_fragments": 1603, "total_fragments": 3169, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000308615.1", "gtdb_species": "s__Nocardia jiangxiensis", "ani": 82.9607, "matched_fragments": 1665, "total_fragments": 3169, "gtdb_taxonomy": 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