{ "type": "genome", "identifier": "GCF_018863195.1", "organism": "Sphingomonas quercus", "title": "Sphingomonas quercus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Forestry University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018863195.1", "bioproject": "PRJNA224116", "biosample": "SAMN19571514", "wgs_master": "JAHKRT000000000.1", "refseq_category": "reference genome", "taxid": "2842451", "species_taxid": "2842451", "organism_name": "Sphingomonas quercus", "infraspecific_name": "strain=XMGL2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/13", "asm_name": "ASM1886319v1", "asm_submitter": "Beijing Forestry University", "gbrs_paired_asm": "GCA_018863195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/863/195/GCF_018863195.1_ASM1886319v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3637754", "genome_size_ungapped": "3637754", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018863195.1-RS_2024_07_13", "annotation_date": "2024-07-13", "total_gene_count": "3406", "protein_coding_gene_count": "3327", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-13", "dateModified": "2021-06-13", "datePublished": "2021-06-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas quercus" ], "sample_taxid": [ "2842451" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Heilongjiang" ], "sample_host_location_id": [], "data_size": "0.986 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3637754", "Number of Sequences": "15", "Longest Sequences (bp)": "647718", "N50 (bp)": "555627", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.9", "Number of CDSs": "3361", "Average Protein Length": "327.8", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas oligoaromativorans", "strain": "strain=DSM 102246", "accession": "GCA_011762195.1", "taxid": 575322, "species_taxid": 575322, "relation_to_type": "type", "validated": true, "ani": 79.8362, "matched_fragments": 534, "total_fragments": 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"organism_name": "Rhizorhabdus dicambivorans", "strain": "strain=Ndbn-20", "accession": "GCA_002355275.1", "taxid": 1850238, "species_taxid": 1850238, "relation_to_type": "type", "validated": true, "ani": 79.6738, "matched_fragments": 487, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas chungangi", "strain": "strain=CGMCC 1.13654", "accession": "GCA_013778325.1", "taxid": 2683589, "species_taxid": 2683589, "relation_to_type": "type", "validated": true, "ani": 79.6146, "matched_fragments": 503, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 79.4945, "matched_fragments": 528, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jatrophae", "strain": "strain=S5-249", "accession": "GCA_900113315.1", "taxid": 1166337, "species_taxid": 1166337, "relation_to_type": "type", "validated": true, "ani": 79.4371, "matched_fragments": 482, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas formosensis", "strain": "strain=CC-Nfb-2", "accession": "GCA_009755815.1", "taxid": 861534, "species_taxid": 861534, "relation_to_type": "type", "validated": true, "ani": 79.3791, "matched_fragments": 501, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, "species_taxid": 397260, "relation_to_type": "type", "validated": true, "ani": 79.2169, "matched_fragments": 506, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gilva", "strain": "strain=ZDH117", "accession": "GCA_003515075.1", 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"Sphingomonas pruni", "strain": "strain=NBRC 15498", "accession": "GCA_001598455.1", "taxid": 40683, "species_taxid": 40683, "relation_to_type": "type", "validated": true, "ani": 78.2745, "matched_fragments": 372, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018863195.1", "gtdb_species": "s__XMGL2 sp018863195", "ani": 100.0, "matched_fragments": 1204, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__XMGL2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000383095.1", "gtdb_species": "s__Sphingomonas_N sp000383095", "ani": 79.9924, 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