{ "type": "genome", "identifier": "GCF_018881545.1", "organism": "Polynucleobacter alcilacus", "title": "Polynucleobacter alcilacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Innsbruck", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018881545.1", "bioproject": "PRJNA224116", "biosample": "SAMN04081345", "wgs_master": "JACVQD000000000.1", "refseq_category": "reference genome", "taxid": "1819739", "species_taxid": "1819739", "organism_name": "Polynucleobacter alcilacus", "infraspecific_name": "strain=UK-Pondora-W15", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/14", "asm_name": "ASM1888154v1", "asm_submitter": "University of Innsbruck", "gbrs_paired_asm": "GCA_018881545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/881/545/GCF_018881545.1_ASM1888154v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2033692", "genome_size_ungapped": "2033200", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018881545.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "2080", "protein_coding_gene_count": "2017", "non_coding_gene_count": "45", "pubmed_id": "34101998" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-14", "dateModified": "2021-06-14", "datePublished": "2021-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Polynucleobacter alcilacus" ], "sample_taxid": [ "1819739" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.580 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2033692", "Number of Sequences": "9", "Longest Sequences (bp)": "1999960", "N50 (bp)": "1999960", "Gap Ratio (%)": "0.024192", "GCcontent (%)": "45.2", "Number of CDSs": "1995", "Average Protein Length": "312.4", "Coding Ratio (%)": "91.9", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter alcilacus", "strain": "strain=UK-Pondora-W15", "accession": "GCA_018881545.1", "taxid": 1819739, "species_taxid": 1819739, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 674, "total_fragments": 674, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Polynucleobacter hirudinilacicola", "strain": "strain=MWH-EgelM1-30-B4", "accession": "GCA_002192535.1", "taxid": 1743166, "species_taxid": 1743166, "relation_to_type": "type", "validated": true, "ani": 81.3838, "matched_fragments": 413, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter parvulilacunae", "strain": "strain=Ross1-W9", "accession": "GCA_018881715.1", "taxid": 1855631, "species_taxid": 1855631, "relation_to_type": "type", "validated": true, "ani": 81.2133, "matched_fragments": 351, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter ibericus", "strain": "strain=es-MAR-2", "accession": "GCA_018687955.1", "taxid": 1819725, "species_taxid": 1819725, "relation_to_type": "type", "validated": true, "ani": 80.9385, "matched_fragments": 366, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter asymbioticus", "strain": "strain=QLW-P1DMWA-1", "accession": "GCA_000016345.1", "taxid": 576611, "species_taxid": 576611, "relation_to_type": "type", "validated": true, "ani": 80.8478, "matched_fragments": 323, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter nymphae", "strain": "strain=AP-Mumm-500A-B3", "accession": "GCA_018882155.1", "taxid": 2081043, "species_taxid": 2081043, "relation_to_type": "type", "validated": true, "ani": 80.7617, "matched_fragments": 405, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter campilacus", "strain": "strain=MWH-Feld-100", "accession": "GCA_002206625.1", "taxid": 1743163, "species_taxid": 1743163, "relation_to_type": "type", "validated": true, "ani": 80.6761, "matched_fragments": 390, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter yangtzensis", "strain": "strain=MWH-JaK3", "accession": "GCA_001595965.1", "taxid": 1743159, "species_taxid": 1743159, "relation_to_type": "type", "validated": true, "ani": 80.6587, "matched_fragments": 363, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter wuianus", "strain": "strain=QLW-P1FAT50C-4", "accession": "GCA_001659725.1", "taxid": 1743168, "species_taxid": 1743168, "relation_to_type": "type", "validated": true, "ani": 80.5203, "matched_fragments": 354, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter finlandensis", "strain": "strain=MWH-Mekk-B1", "accession": "GCA_018881755.1", "taxid": 1855894, "species_taxid": 1855894, "relation_to_type": "type", "validated": true, "ani": 80.0359, "matched_fragments": 318, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter tropicus", "strain": "strain=MWH-UH21B", "accession": "GCA_013307225.1", "taxid": 1743174, "species_taxid": 1743174, "relation_to_type": "type", "validated": true, "ani": 79.6899, "matched_fragments": 301, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter meluiroseus", "strain": "strain=AP-Melu-1000-B4", "accession": "GCA_900205755.1", "taxid": 1938814, "species_taxid": 1938814, "relation_to_type": "type", "validated": true, "ani": 79.4777, "matched_fragments": 191, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter paneuropaeus", "strain": "strain=MG-25-Pas1-D2", "accession": "GCA_003261235.1", "taxid": 2527775, "species_taxid": 2527775, "relation_to_type": "type", "validated": true, "ani": 79.3421, "matched_fragments": 231, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018882245.1", "gtdb_species": "s__Polynucleobacter sp018882245", "ani": 80.9885, "matched_fragments": 335, "total_fragments": 674, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018687955.1", "gtdb_species": "s__Polynucleobacter sp018687955", "ani": 80.9385, "matched_fragments": 366, "total_fragments": 674, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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