{ "type": "genome", "identifier": "GCF_018918285.1", "organism": "Clostridium mobile", "title": "Clostridium mobile", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018918285.1", "bioproject": "PRJNA224116", "biosample": "SAMN19374004", "wgs_master": "JAHLQF000000000.1", "refseq_category": "reference genome", "taxid": "2841512", "species_taxid": "2841512", "organism_name": "Clostridium mobile", "infraspecific_name": "strain=MSJ-11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/16", "asm_name": "ASM1891828v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_018918285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/918/285/GCF_018918285.1_ASM1891828v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4014245", "genome_size_ungapped": "4014245", "gc_percent": "30.500000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018918285.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4033", "protein_coding_gene_count": "3902", "non_coding_gene_count": "109", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-16", "dateModified": "2021-06-16", "datePublished": "2021-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium mobile" ], "sample_taxid": [ "2841512" ], "sample_host_organism": [ "Macaca fascicularis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Suzhou" ], "sample_host_location_id": [], "data_size": "1.098 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4014245", "Number of Sequences": "18", "Longest Sequences (bp)": "1207678", "N50 (bp)": "1137742", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.4", "Number of CDSs": "3949", "Average Protein Length": "294.6", "Coding Ratio (%)": "86.9", "Number of rRNAs": "8", "Number of tRNAs": "75", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium mobile", "strain": "strain=MSJ-11", "accession": "GCA_018918285.1", "taxid": 2841512, "species_taxid": 2841512, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1331, "total_fragments": 1331, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium lundense", "strain": "strain=DSM 17049", "accession": "GCA_000619945.1", "taxid": 319475, "species_taxid": 319475, "relation_to_type": "type", "validated": true, "ani": 79.0153, "matched_fragments": 432, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tetanomorphum", "strain": "strain=DSM 4474", "accession": "GCA_017873215.1", "taxid": 1553, "species_taxid": 1553, "relation_to_type": "type", "validated": true, "ani": 78.7447, "matched_fragments": 415, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium botulinum", "strain": "strain=ATCC 25763", "accession": "GCA_011017965.1", "taxid": 1491, "species_taxid": 1491, "relation_to_type": "type", "validated": true, "ani": 78.5694, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium aciditolerans", "strain": "strain=DSM 17425", "accession": "GCA_016316925.1", "taxid": 339861, "species_taxid": 339861, "relation_to_type": "type", "validated": true, "ani": 77.9217, "matched_fragments": 197, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium rectalis", "strain": "strain=Marseille-P4200", "accession": "GCA_900626095.1", "taxid": 2040295, "species_taxid": 2040295, "relation_to_type": "type", "validated": true, "ani": 77.737, "matched_fragments": 286, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium muellerianum", "strain": "strain=P21", "accession": "GCA_012926525.1", "taxid": 2716538, "species_taxid": 2716538, "relation_to_type": "type", "validated": true, "ani": 77.3794, "matched_fragments": 215, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium carboxidivorans", "strain": "strain=P7", "accession": "GCA_001038625.1", "taxid": 217159, "species_taxid": 217159, "relation_to_type": "type", "validated": true, "ani": 77.1637, "matched_fragments": 226, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium acetireducens", "strain": "strain=DSM 10703", "accession": "GCA_001758365.1", "taxid": 76489, "species_taxid": 76489, "relation_to_type": "type", "validated": true, "ani": 76.9625, "matched_fragments": 189, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium septicum", "strain": "strain=DSM 7534", "accession": "GCA_003606265.1", "taxid": 1504, "species_taxid": 1504, "relation_to_type": "type", "validated": true, "ani": 76.927, "matched_fragments": 123, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium drakei", "strain": "strain=SL1", "accession": "GCA_003096175.1", "taxid": 332101, "species_taxid": 332101, "relation_to_type": "type", "validated": true, "ani": 76.8175, "matched_fragments": 244, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium septicum", "strain": "strain=FDAARGOS_1551", "accession": "GCA_020736665.1", "taxid": 1504, "species_taxid": 1504, "relation_to_type": "type", "validated": true, "ani": 76.8173, "matched_fragments": 125, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium acetobutylicum", "strain": "strain=ATCC 824", "accession": "GCA_000008765.1", "taxid": 1488, "species_taxid": 1488, "relation_to_type": "type", "validated": true, "ani": 76.4423, "matched_fragments": 108, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium bornimense", "strain": "strain=type strain: M2/40", "accession": "GCA_000577895.1", "taxid": 1216932, "species_taxid": 1216932, "relation_to_type": "type", "validated": true, "ani": 76.3885, "matched_fragments": 101, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium chromiireducens", "strain": "strain=DSM 23318", "accession": "GCA_002029255.1", "taxid": 225345, "species_taxid": 225345, "relation_to_type": "type", "validated": true, "ani": 76.0967, "matched_fragments": 103, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium manihotivorum", "strain": "strain=CT4", "accession": "GCA_004015185.1", "taxid": 2320868, "species_taxid": 2320868, "relation_to_type": "type", "validated": true, "ani": 76.086, "matched_fragments": 128, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tissierella praeacuta", "strain": "strain=DSM 18095", "accession": "GCA_900128955.1", "taxid": 43131, "species_taxid": 43131, 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