{ "type": "genome", "identifier": "GCF_018919175.1", "organism": "Clostridium simiarum", "title": "Clostridium simiarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018919175.1", "bioproject": "PRJNA224116", "biosample": "SAMN19373998", "wgs_master": "JAHLQL000000000.1", "refseq_category": "reference genome", "taxid": "2841506", "species_taxid": "2841506", "organism_name": "Clostridium simiarum", "infraspecific_name": "strain=MSJ-4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/16", "asm_name": "ASM1891917v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_018919175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/919/175/GCF_018919175.1_ASM1891917v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3798665", "genome_size_ungapped": "3798665", "gc_percent": "30.500000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018919175.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3493", "protein_coding_gene_count": "3379", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-16", "dateModified": "2021-06-16", "datePublished": "2021-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium simiarum" ], "sample_taxid": [ "2841506" ], "sample_host_organism": [ "Macaca fascicularis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Suzhou" ], "sample_host_location_id": [], "data_size": "1.037 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3798665", "Number of Sequences": "59", "Longest Sequences (bp)": "1696836", "N50 (bp)": "406816", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.4", "Number of CDSs": "3483", "Average Protein Length": "301.0", "Coding Ratio (%)": "82.8", "Number of rRNAs": "4", "Number of tRNAs": "58", "Number of CRISPRs": "25" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium simiarum", "strain": "strain=MSJ-4", "accession": "GCA_018919175.1", "taxid": 2841506, "species_taxid": 2841506, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium sporogenes", "strain": "strain=NCTC13020", "accession": "GCA_900461305.1", "taxid": 1509, "species_taxid": 1509, "relation_to_type": "type", "validated": true, "ani": 77.6191, "matched_fragments": 208, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium frigidicarnis", "strain": "strain=DSM 12271", "accession": "GCA_900111985.1", "taxid": 84698, "species_taxid": 84698, "relation_to_type": "type", "validated": true, "ani": 77.5486, "matched_fragments": 218, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium lundense", "strain": "strain=DSM 17049", "accession": "GCA_000619945.1", "taxid": 319475, "species_taxid": 319475, "relation_to_type": "type", "validated": true, "ani": 76.9544, "matched_fragments": 193, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=NCTC8380", "accession": "GCA_900461065.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 76.8691, "matched_fragments": 190, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=DSM 2631", "accession": "GCA_900129365.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 76.7765, "matched_fragments": 190, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium ihumii", "strain": "strain=AP5", "accession": "GCA_000612845.1", "taxid": 1470356, "species_taxid": 1470356, "relation_to_type": "type", "validated": true, "ani": 76.5998, "matched_fragments": 176, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium weizhouense", "strain": "strain=YB-6", "accession": "GCA_019431045.1", "taxid": 2859781, "species_taxid": 2859781, "relation_to_type": "type", "validated": true, "ani": 76.5477, "matched_fragments": 150, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium muellerianum", "strain": "strain=P21", "accession": "GCA_012926525.1", "taxid": 2716538, "species_taxid": 2716538, "relation_to_type": "type", "validated": true, "ani": 76.5203, "matched_fragments": 188, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cavendishii", "strain": "strain=DSM 21758", "accession": "GCA_900141845.1", "taxid": 349931, "species_taxid": 349931, "relation_to_type": "type", "validated": true, "ani": 76.5026, "matched_fragments": 205, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium senegalense", "strain": "strain=type strain: JC122", "accession": "GCA_000285575.1", "taxid": 1465809, 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