{
    "type": "genome",
    "identifier": "GCF_018919205.1",
    "organism": "Dysosmobacter acutus",
    "title": "Dysosmobacter acutus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Institute of Microbiology of the Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018919205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN19373996",
        "wgs_master": "JAHLQN000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2841504",
        "species_taxid": "2841504",
        "organism_name": "Dysosmobacter acutus",
        "infraspecific_name": "strain=MSJ-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/16",
        "asm_name": "ASM1891920v1",
        "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_018919205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/919/205/GCF_018919205.1_ASM1891920v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3161374",
        "genome_size_ungapped": "3161374",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018919205.1-RS_2024_04_01",
        "annotation_date": "2024-04-01",
        "total_gene_count": "3107",
        "protein_coding_gene_count": "3024",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-16",
    "dateModified": "2021-06-16",
    "datePublished": "2021-06-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dysosmobacter acutus"
        ],
        "sample_taxid": [
            "2841504"
        ],
        "sample_host_organism": [
            "Macaca fascicularis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Suzhou"
        ],
        "sample_host_location_id": [],
        "data_size": "0.888 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3161374",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "3156307",
        "N50 (bp)": "3156307",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.3",
        "Number of CDSs": "3086",
        "Average Protein Length": "305.6",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "9",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Dysosmobacter acutus",
                "strain": "strain=MSJ-2",
                "accession": "GCA_018919205.1",
                "taxid": 2841504,
                "species_taxid": 2841504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1050,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
                "strain": "strain=SRB-521-5-I",
                "accession": "GCA_004154955.1",
                "taxid": 1297617,
                "species_taxid": 1297617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.187,
                "matched_fragments": 148,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
                "strain": "strain=DSM 26588",
                "accession": "GCA_003096335.1",
                "taxid": 1297617,
                "species_taxid": 1297617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0241,
                "matched_fragments": 144,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
                "strain": "strain=DSM 26588",
                "accession": "GCA_024622565.1",
                "taxid": 1297617,
                "species_taxid": 1297617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8077,
                "matched_fragments": 142,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter welbionis",
                "strain": "strain=J115",
                "accession": "GCA_005121165.3",
                "taxid": 2093857,
                "species_taxid": 2093857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0075,
                "matched_fragments": 312,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pusillibacter faecalis",
                "strain": "strain=MM59",
                "accession": "GCA_018408705.1",
                "taxid": 2714358,
                "species_taxid": 2714358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2697,
                "matched_fragments": 211,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vescimonas fastidiosa",
                "strain": "strain=MM35",
                "accession": "GCA_018326305.1",
                "taxid": 2714353,
                "species_taxid": 2714353,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9116,
                "matched_fragments": 176,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vescimonas coprocola",
                "strain": "strain=MM50",
                "accession": "GCA_018408575.1",
                "taxid": 2714355,
                "species_taxid": 2714355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8164,
                "matched_fragments": 212,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium phoceensis",
                "strain": "strain=GD3",
                "accession": "GCA_001244495.1",
                "taxid": 1650661,
                "species_taxid": 1650661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3398,
                "matched_fragments": 150,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=JCM 32125",
                "accession": "GCA_010508875.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3242,
                "matched_fragments": 187,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oscillibacter ruminantium",
                "strain": "strain=GH1",
                "accession": "GCA_000307265.1",
                "taxid": 1263547,
                "species_taxid": 1263547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1855,
                "matched_fragments": 224,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=ATCC 29863",
                "accession": "GCA_000239295.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.9693,
                "matched_fragments": 175,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoflavonifractor gallinarum",
                "strain": "strain=DSM 107456",
                "accession": "GCA_014982855.1",
                "taxid": 2779352,
                "species_taxid": 2779352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7144,
                "matched_fragments": 161,
                "total_fragments": 1053,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018919205.1",
                "gtdb_species": "s__NSJ-62 sp018919205",
                "ani": 100.0,
                "matched_fragments": 1050,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__NSJ-62",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014334055.1",
                "gtdb_species": "s__NSJ-62 sp014334055",
                "ani": 91.3218,
                "matched_fragments": 728,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__NSJ-62",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016902445.1",
                "gtdb_species": "s__Dysosmobacter avistercoris",
                "ani": 80.065,
                "matched_fragments": 305,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_018228705.1",
                "gtdb_species": "s__Dysosmobacter sp018228705",
                "ani": 79.8556,
                "matched_fragments": 347,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019118505.1",
                "gtdb_species": "s__Dysosmobacter excrementavium",
                "ani": 79.5989,
                "matched_fragments": 288,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900544955.1",
                "gtdb_species": "s__Dysosmobacter sp900544955",
                "ani": 79.5896,
                "matched_fragments": 294,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019118245.1",
                "gtdb_species": "s__Dysosmobacter excrementigallinarum",
                "ani": 79.5823,
                "matched_fragments": 306,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900770295.1",
                "gtdb_species": "s__Dysosmobacter sp900770295",
                "ani": 79.3371,
                "matched_fragments": 297,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018408705.1",
                "gtdb_species": "s__Dysosmobacter sp014297375",
                "ani": 79.2933,
                "matched_fragments": 210,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "98.99",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_017469475.1",
                "gtdb_species": "s__Dysosmobacter sp017469475",
                "ani": 79.2819,
                "matched_fragments": 245,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900546705.1",
                "gtdb_species": "s__Dysosmobacter sp900546705",
                "ani": 79.0833,
                "matched_fragments": 252,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000436875.1",
                "gtdb_species": "s__Dysosmobacter sp000436875",
                "ani": 79.0338,
                "matched_fragments": 251,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "95.67",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900548505.1",
                "gtdb_species": "s__Dysosmobacter sp900548505",
                "ani": 79.0191,
                "matched_fragments": 260,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910579435.1",
                "gtdb_species": "s__Dysosmobacter sp910579435",
                "ani": 78.6809,
                "matched_fragments": 243,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910579365.1",
                "gtdb_species": "s__Dysosmobacter sp910579365",
                "ani": 78.4372,
                "matched_fragments": 247,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002161215.1",
                "gtdb_species": "s__Flavonifractor avistercoris",
                "ani": 78.2753,
                "matched_fragments": 226,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.82",
                "min_intra_species_ani": "96.45",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000283575.1",
                "gtdb_species": "s__Oscillibacter valericigenes",
                "ani": 78.178,
                "matched_fragments": 221,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Oscillibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004560375.1",
                "gtdb_species": "s__Enterenecus sp004560375",
                "ani": 78.0423,
                "matched_fragments": 143,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Enterenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019117605.1",
                "gtdb_species": "s__Intestinimonas stercoravium",
                "ani": 77.6879,
                "matched_fragments": 154,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019119165.1",
                "gtdb_species": "s__Flavonifractor intestinigallinarum",
                "ani": 77.5194,
                "matched_fragments": 145,
                "total_fragments": 1053,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Dysosmobacter",
        "acutus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}