{
    "type": "genome",
    "identifier": "GCF_018919215.1",
    "organism": "Alkaliphilus flagellatus",
    "title": "Alkaliphilus flagellatus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Institute of Microbiology of the Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018919215.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN19373999",
        "wgs_master": "JAHLQK000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2841507",
        "species_taxid": "2841507",
        "organism_name": "Alkaliphilus flagellatus",
        "infraspecific_name": "strain=MSJ-5",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/16",
        "asm_name": "ASM1891921v1",
        "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_018919215.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/919/215/GCF_018919215.1_ASM1891921v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3599251",
        "genome_size_ungapped": "3599251",
        "gc_percent": "31.500000",
        "replicon_count": "0",
        "scaffold_count": "30",
        "contig_count": "30",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018919215.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "3603",
        "protein_coding_gene_count": "3496",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-16",
    "dateModified": "2021-06-16",
    "datePublished": "2021-06-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alkaliphilus flagellatus"
        ],
        "sample_taxid": [
            "2841507"
        ],
        "sample_host_organism": [
            "Macaca fascicularis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Suzhou"
        ],
        "sample_host_location_id": [],
        "data_size": "0.995 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3599251",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "1059145",
        "N50 (bp)": "534169",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "31.6",
        "Number of CDSs": "3553",
        "Average Protein Length": "286.7",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alkaliphilus flagellatus",
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                "relation_to_type": "type",
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                "matched_fragments": 1188,
                "total_fragments": 1188,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Tissierella simiarum",
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                "accession": "GCA_018917865.1",
                "taxid": 2841534,
                "species_taxid": 2841534,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "matched_fragments": 304,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium formicaceticum",
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                "accession": "GCA_001854185.1",
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                "species_taxid": 1497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1491,
                "matched_fragments": 97,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium formicaceticum",
                "strain": "strain=DSM 92",
                "accession": "GCA_002080475.1",
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                "species_taxid": 1497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0464,
                "matched_fragments": 96,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkaliphilus metalliredigens",
                "strain": "strain=QYMF",
                "accession": "GCA_000016985.1",
                "taxid": 208226,
                "species_taxid": 208226,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerovirgula multivorans",
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                "accession": "GCA_900188145.1",
                "taxid": 312168,
                "species_taxid": 312168,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium aceticum",
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                "accession": "GCA_000949285.1",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Alkaliphilus peptidifermentans",
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                "species_taxid": 426129,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3951,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serpentinicella alkaliphila",
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                "taxid": 1734049,
                "species_taxid": 1734049,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "taxid": 415015,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tepidibacter formicigenes",
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                "accession": "GCA_900142235.1",
                "taxid": 227138,
                "species_taxid": 227138,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4953,
                "matched_fragments": 80,
                "total_fragments": 1188,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paeniclostridium sordellii",
                "strain": "strain=ATCC9714",
                "accession": "GCA_000953675.1",
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            }
        ],
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                "mean_intra_species_ani": "N/A",
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}