{
    "type": "genome",
    "identifier": "GCF_018919385.1",
    "organism": "Geomonas diazotrophica",
    "title": "Geomonas diazotrophica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018919385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN19587522",
        "wgs_master": "JAHLMF000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2843197",
        "species_taxid": "2843197",
        "organism_name": "Geomonas diazotrophica",
        "infraspecific_name": "strain=Red69",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/16",
        "asm_name": "ASM1891938v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_018919385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/919/385/GCF_018919385.1_ASM1891938v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4651047",
        "genome_size_ungapped": "4651047",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "58",
        "contig_count": "58",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018919385.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4122",
        "protein_coding_gene_count": "4014",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-16",
    "dateModified": "2021-06-16",
    "datePublished": "2021-06-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Geomonas diazotrophica"
        ],
        "sample_taxid": [
            "2843197"
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        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
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        "sample_host_location_id": [],
        "data_size": "1.303 MB",
        "sample_ph_range": {
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            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "4651047",
        "Number of Sequences": "58",
        "Longest Sequences (bp)": "526003",
        "N50 (bp)": "260083",
        "Gap Ratio (%)": "0.000108",
        "GCcontent (%)": "61.9",
        "Number of CDSs": "4053",
        "Average Protein Length": "334.2",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "4",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_018919395.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geomonas anaerohicana",
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                "accession": "GCA_016458305.1",
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                "ani_threshold": 95,
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            },
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                "accession": "GCA_016458235.1",
                "taxid": 2798582,
                "species_taxid": 2798582,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1551,
                "matched_fragments": 1222,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geomonas agri",
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                "accession": "GCA_020179605.1",
                "taxid": 2873702,
                "species_taxid": 2873702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4375,
                "matched_fragments": 1222,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geomonas oryzae",
                "strain": "strain=S43",
                "accession": "GCA_004117875.1",
                "taxid": 2364273,
                "species_taxid": 2364273,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1110,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_018986935.1",
                "gtdb_species": "s__Geomonas sp018986935",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geomonas",
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                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "99.10",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_length": null,
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        "genome_size": null,
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        "coding_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Geomonas",
        "diazotrophica"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}