{ "type": "genome", "identifier": "GCF_018967865.2", "organism": "Hymenobacter siberiensis", "title": "Hymenobacter siberiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Polar Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018967865.2", "bioproject": "PRJNA224116", "biosample": "SAMN19700935", "wgs_master": "JAHLZY000000000.2", "refseq_category": "reference genome", "taxid": "2848396", "species_taxid": "2848396", "organism_name": "Hymenobacter siberiensis", "infraspecific_name": "strain=PAMC 29294", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/21", "asm_name": "ASM1896786v2", "asm_submitter": "Korea Polar Research Institute", "gbrs_paired_asm": "GCA_018967865.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/967/865/GCF_018967865.2_ASM1896786v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4832299", "genome_size_ungapped": "4832299", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018967865.2-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4284", "protein_coding_gene_count": "4142", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-21", "dateModified": "2021-10-21", "datePublished": "2021-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter siberiensis" ], "sample_taxid": [ "2848396" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Arctic Ocean" ], "sample_host_location_id": [], "data_size": "1.347 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4832299", "Number of Sequences": "3", "Longest Sequences (bp)": "4644800", "N50 (bp)": "4644800", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.7", "Number of CDSs": "4227", "Average Protein Length": "326.1", "Coding Ratio (%)": "85.6", "Number of rRNAs": "6", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter artigasi", "strain": "strain=1B", "accession": "GCA_012275535.1", "taxid": 2719616, "species_taxid": 2719616, "relation_to_type": "type", "validated": true, "ani": 93.4736, "matched_fragments": 1403, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 2819236, "species_taxid": 2819236, "relation_to_type": "type", "validated": true, "ani": 84.9281, "matched_fragments": 1206, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rubidus", "strain": "strain=DG7B", "accession": "GCA_016734815.1", "taxid": 1441626, "species_taxid": 1441626, "relation_to_type": "type", "validated": true, "ani": 84.3055, "matched_fragments": 1119, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter ruricola", "strain": "strain=BT662", "accession": "GCA_015694525.1", "taxid": 2791023, "species_taxid": 2791023, "relation_to_type": "type", "validated": true, "ani": 84.1392, "matched_fragments": 1128, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 84.1254, "matched_fragments": 1168, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter frigidus", "strain": "strain=CGMCC 1.14966", "accession": "GCA_014640435.1", "taxid": 1524095, "species_taxid": 1524095, "relation_to_type": "type", "validated": true, "ani": 83.68, "matched_fragments": 1093, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter properus", "strain": "strain=BT439", "accession": "GCA_015694735.1", "taxid": 2791026, "species_taxid": 2791026, "relation_to_type": "type", "validated": true, "ani": 83.6214, "matched_fragments": 1139, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter lapidarius", "strain": "strain=CCM 8643", "accession": "GCA_001816145.1", "taxid": 1908237, "species_taxid": 1908237, "relation_to_type": "type", "validated": true, "ani": 83.216, "matched_fragments": 1006, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacialis", "strain": "strain=CCM 8648", "accession": "GCA_001816165.1", "taxid": 1908236, "species_taxid": 1908236, "relation_to_type": "type", "validated": true, "ani": 83.0437, "matched_fragments": 993, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter jeongseonensis", "strain": "strain=BT683", "accession": "GCA_015694725.1", "taxid": 2791027, "species_taxid": 2791027, "relation_to_type": "type", "validated": true, "ani": 82.3268, "matched_fragments": 1027, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter montanus", "strain": "strain=BT664", "accession": "GCA_014699115.1", "taxid": 2771359, "species_taxid": 2771359, "relation_to_type": "type", "validated": true, "ani": 80.8923, "matched_fragments": 898, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 78.8694, "matched_fragments": 663, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 78.7241, "matched_fragments": 649, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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"s__Hymenobacter negativus_A", "ani": 87.1117, "matched_fragments": 1234, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.78", "min_intra_species_ani": "97.78", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016734815.1", "gtdb_species": "s__Hymenobacter rubidus", "ani": 84.2997, "matched_fragments": 1120, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015694525.1", "gtdb_species": "s__Hymenobacter ruricola", "ani": 84.1391, 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