{ "type": "genome", "identifier": "GCF_018982785.1", "organism": "Enterococcus innesii", "title": "Enterococcus innesii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quadram Institute Bioscience", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018982785.1", "bioproject": "PRJNA224116", "biosample": "SAMN19324350", "wgs_master": "JAHHEN000000000.1", "refseq_category": "na", "taxid": "2839759", "species_taxid": "2839759", "organism_name": "Enterococcus innesii", "infraspecific_name": "strain=GAL7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/21", "asm_name": "ASM1898278v1", "asm_submitter": "Quadram Institute Bioscience", "gbrs_paired_asm": "GCA_018982785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/982/785/GCF_018982785.1_ASM1898278v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3692254", "genome_size_ungapped": "3692254", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018982785.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "3608", "protein_coding_gene_count": "3017", "non_coding_gene_count": "98", "pubmed_id": "34919037" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-21", "dateModified": "2021-06-21", "datePublished": "2021-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus innesii" ], "sample_taxid": [ "2839759" ], "sample_host_organism": [ "Galleria mellonella" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.044 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3692254", "Number of Sequences": "14", "Longest Sequences (bp)": "685966", "N50 (bp)": "598782", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.4", "Number of CDSs": "3882", "Average Protein Length": "273.4", "Coding Ratio (%)": "86.2", "Number of rRNAs": "20", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus casseliflavus", "strain": "strain=NCTC12361", "accession": "GCA_900447665.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 94.8445, 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1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus gallinarum", "strain": "strain=DSM 24841", "accession": "GCA_001886155.1", "taxid": 1353, "species_taxid": 1353, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9773, "matched_fragments": 408, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus sulfureus", "strain": "strain=ATCC 49903", "accession": "GCA_000407025.1", "taxid": 1356, "species_taxid": 1356, "relation_to_type": "type", "validated": true, "ani": 79.1467, "matched_fragments": 111, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=PartL-Efaecalis-RM8376", "accession": "GCA_022869705.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 79.0778, "matched_fragments": 110, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus caccae", "strain": "strain=ATCC BAA-1240", "accession": "GCA_000407145.1", "taxid": 317735, "species_taxid": 317735, "relation_to_type": "type", "validated": true, "ani": 77.7447, "matched_fragments": 123, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus aquimarinus", "strain": "strain=DSM 17690", "accession": "GCA_001885765.1", "taxid": 328396, "species_taxid": 328396, "relation_to_type": "type", "validated": true, "ani": 77.5143, "matched_fragments": 93, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002850555.1", "gtdb_species": "s__Enterococcus_D sp002850555", "ani": 95.6105, "matched_fragments": 1060, "total_fragments": 1225, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.74", "num_clustered_genomes": 46, "status": "conclusive" }, { "accession": "GCF_001544095.1", "gtdb_species": "s__Enterococcus_D casseliflavus", "ani": 94.7471, "matched_fragments": 954, "total_fragments": 1225, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.00", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 83, "status": "-" }, { "accession": "GCF_002140915.1", "gtdb_species": "s__Enterococcus_D sp002140915", "ani": 80.3529, "matched_fragments": 479, "total_fragments": 1225, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Enterococcus", "innesii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }