{ "type": "genome", "identifier": "GCF_018982945.1", "organism": "Anaerostipes faecalis", "title": "Anaerostipes faecalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korean Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018982945.1", "bioproject": "PRJNA224116", "biosample": "SAMN14986025", "wgs_master": "JABRXE000000000.1", "refseq_category": "reference genome", "taxid": "2738446", "species_taxid": "2738446", "organism_name": "Anaerostipes faecalis", "infraspecific_name": "strain=AGMB03513", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/21", "asm_name": "ASM1898294v1", "asm_submitter": "Korean Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_018982945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/982/945/GCF_018982945.1_ASM1898294v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2544126", "genome_size_ungapped": "2544126", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018982945.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2597", "protein_coding_gene_count": "2486", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-21", "dateModified": "2021-06-21", "datePublished": "2021-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Anaerostipes faecalis" ], "sample_taxid": [ "2738446" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Wanju-Gun" ], "sample_host_location_id": [], "data_size": "0.710 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2544126", "Number of Sequences": "37", "Longest Sequences (bp)": "610207", "N50 (bp)": "232061", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.0", "Number of CDSs": "2537", "Average Protein Length": "299.1", "Coding Ratio (%)": "89.5", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerostipes faecalis", "strain": "strain=AGMB03513", "accession": "GCA_018982945.1", "taxid": 2738446, 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"organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 77.7259, "matched_fragments": 63, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerostipes rhamnosivorans", "strain": "strain=1y2", "accession": "GCA_005280655.1", "taxid": 1229621, "species_taxid": 1229621, "relation_to_type": "type", "validated": true, "ani": 77.7252, "matched_fragments": 110, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerostipes hominis", "strain": "strain=BG01", "accession": "GCA_002270485.1", "taxid": 2025494, "species_taxid": 2025494, "relation_to_type": "type", "validated": true, "ani": 77.299, "matched_fragments": 111, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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