{ "type": "genome", "identifier": "GCF_018998565.1", "organism": "Paenibacillus oleatilyticus", "title": "Paenibacillus oleatilyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Centre for Cell Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018998565.1", "bioproject": "PRJNA224116", "biosample": "SAMN19696582", "wgs_master": "JAHNZO000000000.1", "refseq_category": "reference genome", "taxid": "2594886", "species_taxid": "2594886", "organism_name": "Paenibacillus oleatilyticus", "infraspecific_name": "strain=SM69", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/22", "asm_name": "ASM1899856v1", "asm_submitter": "National Centre for Cell Science", "gbrs_paired_asm": "GCA_018998565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/998/565/GCF_018998565.1_ASM1899856v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7899415", "genome_size_ungapped": "7899345", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "236", "contig_count": "236", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018998565.1-RS_2024_08_02", "annotation_date": "2024-08-02", "total_gene_count": "7413", "protein_coding_gene_count": "7204", "non_coding_gene_count": "98", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-22", "dateModified": "2021-06-22", "datePublished": "2021-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus oleatilyticus" ], "sample_taxid": [ "2594886" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Rohtak, Haryana" ], "sample_host_location_id": [], "data_size": "2.251 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 4.55, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7899415", "Number of Sequences": "236", "Longest Sequences (bp)": "756423", "N50 (bp)": "183783", "Gap Ratio (%)": "0.000886", "GCcontent (%)": "53.2", "Number of CDSs": "7387", "Average Protein Length": "307.3", "Coding Ratio (%)": "86.2", "Number of rRNAs": "2", "Number of tRNAs": "82", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus elgii", "strain": "strain=NBRC 100335", "accession": "GCA_004000865.1", "taxid": 189691, "species_taxid": 189691, "relation_to_type": "type", "validated": true, "ani": 93.5121, "matched_fragments": 2088, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tyrfis", "strain": "strain=MSt1", "accession": "GCA_000722545.1", "taxid": 1501230, "species_taxid": 1501230, "relation_to_type": "type", "validated": true, "ani": 93.0115, "matched_fragments": 2041, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tianmuensis", "strain": "strain=CGMCC 1.8946", "accession": "GCA_900100345.1", "taxid": 624147, "species_taxid": 624147, "relation_to_type": "type", "validated": true, "ani": 91.3795, "matched_fragments": 1559, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ehimensis", "strain": "strain=NBRC 15659", "accession": "GCA_004000785.1", "taxid": 79264, "species_taxid": 79264, "relation_to_type": "type", "validated": true, "ani": 91.309, "matched_fragments": 1990, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus allorhizosphaerae", "strain": "strain=CIP 111802", "accession": "GCA_910594985.1", "taxid": 2849866, "species_taxid": 2849866, "relation_to_type": "type", "validated": true, "ani": 78.91, "matched_fragments": 507, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus validus", "strain": "strain=NBRC 15382", "accession": "GCA_004000985.1", "taxid": 44253, "species_taxid": 44253, "relation_to_type": "type", "validated": true, "ani": 78.6601, "matched_fragments": 446, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus puerhi", "strain": "strain=SJY2", "accession": "GCA_009846885.1", "taxid": 2692622, "species_taxid": 2692622, "relation_to_type": "type", "validated": true, "ani": 78.268, "matched_fragments": 376, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus darwinianus", "strain": "strain=Br", "accession": "GCA_000598065.1", "taxid": 1380763, "species_taxid": 1380763, "relation_to_type": "type", "validated": true, "ani": 77.2509, "matched_fragments": 150, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 77.0277, "matched_fragments": 206, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus caui", "strain": "strain=81-11", "accession": "GCA_019904135.1", "taxid": 2873927, "species_taxid": 2873927, "relation_to_type": "type", "validated": true, "ani": 76.8706, "matched_fragments": 125, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rhizophilus", "strain": "strain=7197", "accession": "GCA_003854965.1", "taxid": 1850366, "species_taxid": 1850366, "relation_to_type": "type", "validated": true, "ani": 76.7938, "matched_fragments": 130, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piscarius", "strain": "strain=P121", "accession": "GCA_022234545.1", "taxid": 1089681, "species_taxid": 1089681, "relation_to_type": "type", "validated": true, "ani": 75.7266, "matched_fragments": 117, "total_fragments": 2576, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 4.55, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018998565.1", "gtdb_species": "s__Paenibacillus_G sp018998565", "ani": 100.0, "matched_fragments": 2569, "total_fragments": 2576, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001399685.1", "gtdb_species": "s__Paenibacillus_G sp001399685", "ani": 93.7126, "matched_fragments": 2014, "total_fragments": 2576, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004000865.1", "gtdb_species": "s__Paenibacillus_G elgii", "ani": 93.5119, "matched_fragments": 2088, "total_fragments": 2576, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "95.93", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000722545.1", "gtdb_species": "s__Paenibacillus_G tyrfis", "ani": 92.9875, "matched_fragments": 2044, "total_fragments": 2576, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900100345.1", "gtdb_species": "s__Paenibacillus_G tianmuensis", "ani": 91.3795, "matched_fragments": 1559, "total_fragments": 2576, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004000785.1", "gtdb_species": "s__Paenibacillus_G ehimensis", "ani": 91.2894, "matched_fragments": 1993, "total_fragments": 2576, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.10", "min_intra_species_ani": "99.10", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.187, "cell_length": 0.433, "doubling_h": 0.565, "growth_tmp": 30.106, "optimum_tmp": 31.323, "optimum_ph": 7.238, "genome_size": 6197949.921, "gc_content": 50.283, "coding_genes": 5381.029, "rRNA16S_genes": 10.237, "tRNA_genes": 93.313, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.918, "range_salinity": 0.0, "facultative_respiration": 0.347, "anaerobic_respiration": 0.007, "aerobic_respiration": 0.645, "mesophilic_range_tmp": 0.9, "thermophilic_range_tmp": 0.033, "psychrophilic_range_tmp": 0.066, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "oleatilyticus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }