{ "type": "genome", "identifier": "GCF_019029495.1", "organism": "Roseomonas oleicola", "title": "Roseomonas oleicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019029495.1", "bioproject": "PRJNA224116", "biosample": "SAMN17277920", "wgs_master": "JAERQM000000000.1", "refseq_category": "reference genome", "taxid": "2801474", "species_taxid": "2801474", "organism_name": "Roseomonas oleicola", "infraspecific_name": "strain=ROY-5-3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/25", "asm_name": "ASM1902949v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_019029495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/029/495/GCF_019029495.1_ASM1902949v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5620720", "genome_size_ungapped": "5620034", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019029495.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "5365", "protein_coding_gene_count": "5281", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-25", "dateModified": "2021-06-25", "datePublished": "2021-06-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseomonas oleicola" ], "sample_taxid": [ "2801474" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yumen Oilfield" ], "sample_host_location_id": [], "data_size": "1.507 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5620720", "Number of Sequences": "30", "Longest Sequences (bp)": "1438859", "N50 (bp)": "637197", "Gap Ratio (%)": "0.012205", "GCcontent (%)": "69.9", "Number of CDSs": "5360", "Average Protein Length": "322.7", "Coding Ratio (%)": "92.3", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Falsiroseomonas frigidaquae", "strain": "strain=JCM 15073", "accession": "GCA_012163145.1", "taxid": 487318, "species_taxid": 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"organism_name": "Roseomonas coralli", "strain": "strain=M0104", "accession": "GCA_009829925.1", "taxid": 2545983, "species_taxid": 2545983, "relation_to_type": "type", "validated": true, "ani": 78.5347, "matched_fragments": 717, "total_fragments": 1861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas marmotae", "strain": "strain=1318", "accession": "GCA_017654485.1", "taxid": 2768161, "species_taxid": 2768161, "relation_to_type": "type", "validated": true, "ani": 78.5044, "matched_fragments": 687, "total_fragments": 1861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 78.3634, "matched_fragments": 665, "total_fragments": 1861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rosea", "strain": "strain=DSM 14916", 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