{ "type": "genome", "identifier": "GCF_019039035.1", "organism": "Citreicoccus inhibens", "title": "Citreicoccus inhibens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong institute of microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019039035.1", "bioproject": "PRJNA224116", "biosample": "SAMN19735654", "wgs_master": "JAHNZT000000000.1", "refseq_category": "reference genome", "taxid": "2849499", "species_taxid": "2849499", "organism_name": "Citreicoccus inhibens", "infraspecific_name": "strain=M34", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/26", "asm_name": "ASM1903903v1", "asm_submitter": "Guangdong institute of microbiology", "gbrs_paired_asm": "GCA_019039035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/039/035/GCF_019039035.1_ASM1903903v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9046820", "genome_size_ungapped": "9046820", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "123", "contig_count": "123", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019039035.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "7330", "protein_coding_gene_count": "7166", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-26", "dateModified": "2021-06-26", "datePublished": "2021-06-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Citreicoccus inhibens" ], "sample_taxid": [ "2849499" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Nanling National Nature Reserve, Shaoguan, Guangdong Province" ], "sample_host_location_id": [], "data_size": "2.455 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9046820", "Number of Sequences": "123", "Longest Sequences (bp)": "658649", "N50 (bp)": "208455", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.5", "Number of CDSs": "7384", "Average Protein Length": "363.4", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corallococcus llansteffanensis", "strain": "strain=CA051B", "accession": "GCA_003612055.1", "taxid": 2316731, "species_taxid": 2316731, "relation_to_type": "type", "validated": true, "ani": 82.8341, "matched_fragments": 1498, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 82.7098, "matched_fragments": 1741, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus sicarius", "strain": "strain=CA040B", "accession": "GCA_003611735.1", "taxid": 2316726, "species_taxid": 2316726, "relation_to_type": "type", "validated": true, "ani": 82.6707, "matched_fragments": 1580, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus interemptor", "strain": "strain=AB047A", "accession": "GCA_003668875.1", "taxid": 2316720, "species_taxid": 2316720, "relation_to_type": "type", "validated": true, "ani": 82.6601, "matched_fragments": 1642, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 82.6516, "matched_fragments": 1685, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus aberystwythensis", "strain": "strain=AB050A", "accession": "GCA_003612165.1", "taxid": 2316722, "species_taxid": 2316722, "relation_to_type": "type", "validated": true, "ani": 82.6112, "matched_fragments": 1584, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus coralloides", "strain": "strain=DSM 2259", "accession": "GCA_000255295.1", "taxid": 184914, "species_taxid": 184914, "relation_to_type": "type", "validated": true, "ani": 82.5769, "matched_fragments": 1738, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus exiguus", "strain": "strain=DSM 14696", "accession": "GCA_009909105.1", "taxid": 83462, "species_taxid": 83462, "relation_to_type": "type", "validated": true, "ani": 82.4565, "matched_fragments": 1749, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus terminator", "strain": "strain=CA054A", "accession": "GCA_003611635.1", "taxid": 2316733, "species_taxid": 2316733, "relation_to_type": "type", "validated": true, "ani": 82.3211, "matched_fragments": 1585, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 82.0535, "matched_fragments": 1829, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus trucidator", "strain": "strain=CA060A", "accession": "GCA_010894435.1", "taxid": 2709662, "species_taxid": 2709662, "relation_to_type": "type", "validated": true, "ani": 81.9868, "matched_fragments": 1786, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus vastator", "strain": "strain=AM301", "accession": "GCA_010894475.1", "taxid": 2709664, "species_taxid": 2709664, "relation_to_type": "type", "validated": true, "ani": 81.937, "matched_fragments": 1382, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus fallax", "strain": "strain=DSM 14698", "accession": "GCA_012933655.1", "taxid": 394095, "species_taxid": 394095, "relation_to_type": "type", "validated": true, "ani": 81.9298, "matched_fragments": 1698, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=NBRC 100333", "accession": "GCA_007991095.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 81.8225, "matched_fragments": 1742, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=DSM 16525", "accession": "GCA_900111765.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 81.8141, "matched_fragments": 1752, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus virescens", "strain": "strain=DSM 2260", "accession": "GCA_900101905.1", "taxid": 83456, "species_taxid": 83456, "relation_to_type": "type", "validated": true, "ani": 81.7545, "matched_fragments": 1602, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus virescens", "strain": "strain=NBRC 100334", "accession": "GCA_007989405.1", "taxid": 83456, "species_taxid": 83456, "relation_to_type": "type", "validated": true, "ani": 81.705, "matched_fragments": 1574, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus stipitatus", "strain": "strain=DSM 14675", "accession": "GCA_000331735.1", "taxid": 83455, "species_taxid": 83455, "relation_to_type": "neotype", "validated": true, "ani": 81.6603, "matched_fragments": 1718, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis", "strain": "strain=AM401", "accession": "GCA_006636215.1", "taxid": 2590453, "species_taxid": 2590453, "relation_to_type": "type", "validated": true, "ani": 81.5246, "matched_fragments": 1699, "total_fragments": 2957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulgatibacter incomptus", "strain": "strain=DSM 27710", "accession": "GCA_001263175.1", 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