{ "type": "genome", "identifier": "GCF_019047105.1", "organism": "Enterobacter cloacae", "title": "Enterobacter cloacae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019047105.1", "bioproject": "PRJNA224116", "biosample": "SAMN16357573", "wgs_master": "na", "refseq_category": "na", "taxid": "550", "species_taxid": "550", "organism_name": "Enterobacter cloacae", "infraspecific_name": "strain=FDAARGOS 1431", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/28", "asm_name": "ASM1904710v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_019047105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/047/105/GCF_019047105.1_ASM1904710v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5602625", "genome_size_ungapped": "5602625", "gc_percent": "54.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019047105.1-RS_2024_07_20", "annotation_date": "2024-07-20", "total_gene_count": "5532", "protein_coding_gene_count": "5293", "non_coding_gene_count": "122", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-28", "dateModified": "2021-06-28", "datePublished": "2021-06-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacter cloacae" ], "sample_taxid": [ "550" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Braunschweig" ], "sample_host_location_id": [], "data_size": "1.586 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5602625", "Number of Sequences": "3", "Longest Sequences (bp)": "5316745", "N50 (bp)": "5316745", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.6", "Number of CDSs": "5473", "Average Protein Length": "302.6", "Coding Ratio (%)": "88.7", "Number of rRNAs": "25", "Number of tRNAs": "91", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter cloacae", "strain": "strain=FDAARGOS 1431", "accession": "GCA_019047105.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1863, "total_fragments": 1866, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_013376815.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 99.9971, "matched_fragments": 1860, "total_fragments": 1866, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter cloacae subsp. cloacae", "strain": "strain=ATCC 13047", "accession": "GCA_000025565.1", "taxid": 336306, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 99.992, "matched_fragments": 1859, "total_fragments": 1866, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=ATCC 13047", "accession": "GCA_000755525.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 99.9684, "matched_fragments": 1837, "total_fragments": 1866, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=ATCC 13047", "accession": "GCA_001997105.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 99.9438, "matched_fragments": 1744, "total_fragments": 1866, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 99.6714, "matched_fragments": 1615, "total_fragments": 1866, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 89.335, "matched_fragments": 1360, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 89.2162, "matched_fragments": 1287, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 87.8168, "matched_fragments": 1289, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 87.6921, "matched_fragments": 1320, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia pneumoniae", "strain": "strain=49125", "accession": "GCA_017348915.1", "taxid": 2815358, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea deleyi", "strain": "strain=LMG 24200", "accession": "GCA_002095375.1", "taxid": 470932, "species_taxid": 470932, "relation_to_type": "type", "validated": true, "ani": 78.7359, "matched_fragments": 524, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edwardsiella piscicida", "strain": "strain=ACC35.1", "accession": "GCA_001896205.1", "taxid": 1263550, "species_taxid": 1263550, "relation_to_type": "reftype", "validated": true, "ani": 78.2933, "matched_fragments": 336, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000025565.1", "gtdb_species": "s__Enterobacter cloacae", "ani": 99.992, "matched_fragments": 1857, "total_fragments": 1866, "gtdb_taxonomy": 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"gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 197, "status": "-" }, { "accession": "GCF_008364625.1", "gtdb_species": "s__Enterobacter dykesii", "ani": 88.7954, "matched_fragments": 1296, "total_fragments": 1866, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.5795, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "97.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_008080435.1", "gtdb_species": "s__Enterobacter asburiae_C", "ani": 88.7848, "matched_fragments": 1344, "total_fragments": 1866, 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