{
    "type": "genome",
    "identifier": "GCF_019047205.1",
    "organism": "Acinetobacter pittii",
    "title": "Acinetobacter pittii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019047205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16357541",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "48296",
        "species_taxid": "48296",
        "organism_name": "Acinetobacter pittii",
        "infraspecific_name": "strain=FDAARGOS 1399",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/28",
        "asm_name": "ASM1904720v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_019047205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/047/205/GCF_019047205.1_ASM1904720v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3980134",
        "genome_size_ungapped": "3980134",
        "gc_percent": "39.000000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-10",
        "total_gene_count": "3825",
        "protein_coding_gene_count": "3675",
        "non_coding_gene_count": "97",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-28",
    "dateModified": "2021-06-28",
    "datePublished": "2021-06-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acinetobacter pittii"
        ],
        "sample_taxid": [
            "48296"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "1.124 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3980134",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "3854041",
        "N50 (bp)": "3854041",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.8",
        "Number of CDSs": "3690",
        "Average Protein Length": "312.5",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "18",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Acinetobacter pittii",
                "strain": "strain=FDAARGOS 1399",
                "accession": "GCA_019047205.1",
                "taxid": 48296,
                "species_taxid": 48296,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1323,
                "total_fragments": 1325,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acinetobacter pittii",
                "strain": "strain=DSM 25618",
                "accession": "GCA_000836015.1",
                "taxid": 48296,
                "species_taxid": 48296,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9859,
                "matched_fragments": 1283,
                "total_fragments": 1325,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acinetobacter pittii",
                "strain": "strain=CIP 70.29",
                "accession": "GCA_000369045.1",
                "taxid": 48296,
                "species_taxid": 48296,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9667,
                "matched_fragments": 1251,
                "total_fragments": 1325,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acinetobacter pittii",
                "strain": "strain=CIP70.29",
                "accession": "GCA_024390955.1",
                "taxid": 48296,
                "species_taxid": 48296,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9873,
                "matched_fragments": 1163,
                "total_fragments": 1325,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acinetobacter lactucae",
                "strain": "strain=NRRL B-41902",
                "accession": "GCA_001605885.1",
                "taxid": 1785128,
                "species_taxid": 1785128,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.4879,
                "matched_fragments": 1109,
                "total_fragments": 1325,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acinetobacter baumannii",
                "strain": "strain=ATCC 19606",
                "accession": "GCA_020911985.1",
                "taxid": 470,
                "species_taxid": 470,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2848,
                "matched_fragments": 1087,
                "total_fragments": 1325,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acinetobacter baumannii",
                "strain": "strain=PartI-Abaumannii-RM8376",
                "accession": "GCA_022870045.1",
                "taxid": 470,
                "species_taxid": 470,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2745,
                "matched_fragments": 1088,
                "total_fragments": 1325,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acinetobacter junii",
                "strain": "strain=NCTC10307",
                "accession": "GCA_900444875.1",
                "taxid": 40215,
                "species_taxid": 40215,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6553,
                "matched_fragments": 489,
                "total_fragments": 1325,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000369045.1",
                "gtdb_species": "s__Acinetobacter pittii",
                "ani": 99.965,
                "matched_fragments": 1251,
                "total_fragments": 1325,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.31",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 337,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_013009345.1",
                "gtdb_species": "s__Acinetobacter sp013009345",
                "ani": 95.1208,
                "matched_fragments": 1108,
                "total_fragments": 1325,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.73",
                "min_intra_species_ani": "96.63",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_002928115.1",
                "gtdb_species": "s__Acinetobacter pittii_H",
                "ani": 94.5195,
                "matched_fragments": 1112,
                "total_fragments": 1325,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.46",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_001605885.1",
                "gtdb_species": "s__Acinetobacter lactucae",
                "ani": 93.4989,
                "matched_fragments": 1108,
                "total_fragments": 1325,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.34",
                "min_intra_species_ani": "96.55",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_013344765.1",
                "gtdb_species": "s__Acinetobacter lactucae_A",
                "ani": 93.2006,
                "matched_fragments": 900,
                "total_fragments": 1325,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.51",
                "min_intra_species_ani": "97.14",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000399685.1",
                "gtdb_species": "s__Acinetobacter pittii_E",
                "ani": 92.5141,
                "matched_fragments": 1094,
                "total_fragments": 1325,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.019,
        "cell_length": 0.052,
        "doubling_h": -0.144,
        "growth_tmp": 29.0,
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        "gc_content": 38.797,
        "coding_genes": 3614.5,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 72.455,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Acinetobacter",
        "pittii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}