{
    "tc_result": [
        {
            "organism_name": "Citrobacter pasteurii",
            "strain": "strain=FDAARGOS 1424",
            "accession": "GCA_019047765.1",
            "taxid": 1563222,
            "species_taxid": 1563222,
            "relation_to_type": "type",
            "validated": true,
            "ani": 100.0,
            "matched_fragments": 1672,
            "total_fragments": 1672,
            "ani_threshold": 95,
            "status": "inconclusive"
        },
        {
            "organism_name": "Citrobacter pasteurii",
            "strain": "strain=CIP 55.13",
            "accession": "GCA_000826205.1",
            "taxid": 1563222,
            "species_taxid": 1563222,
            "relation_to_type": "type",
            "validated": true,
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            "matched_fragments": 1627,
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            "ani_threshold": 95,
            "status": "inconclusive"
        },
        {
            "organism_name": "Citrobacter youngae",
            "strain": "strain=NCTC13709",
            "accession": "GCA_900638065.1",
            "taxid": 133448,
            "species_taxid": 133448,
            "relation_to_type": "type",
            "validated": true,
            "ani": 95.4412,
            "matched_fragments": 1435,
            "total_fragments": 1672,
            "ani_threshold": 95,
            "status": "inconclusive"
        },
        {
            "organism_name": "Citrobacter youngae",
            "strain": "strain=CCUG 30791",
            "accession": "GCA_003818115.1",
            "taxid": 133448,
            "species_taxid": 133448,
            "relation_to_type": "type",
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            "ani": 95.3997,
            "matched_fragments": 1396,
            "total_fragments": 1672,
            "ani_threshold": 95,
            "status": "inconclusive"
        },
        {
            "organism_name": "Citrobacter braakii",
            "strain": "strain=FDAARGOS 1421",
            "accession": "GCA_019048805.1",
            "taxid": 57706,
            "species_taxid": 57706,
            "relation_to_type": "type",
            "validated": true,
            "ani": 90.108,
            "matched_fragments": 1297,
            "total_fragments": 1672,
            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Citrobacter europaeus",
            "strain": "strain=97/79",
            "accession": "GCA_900079995.3",
            "taxid": 1914243,
            "species_taxid": 1914243,
            "relation_to_type": "type",
            "validated": true,
            "ani": 90.1028,
            "matched_fragments": 1340,
            "total_fragments": 1672,
            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Citrobacter braakii",
            "strain": "strain=ATCC 51113",
            "accession": "GCA_002075345.1",
            "taxid": 57706,
            "species_taxid": 57706,
            "relation_to_type": "type",
            "validated": true,
            "ani": 90.0225,
            "matched_fragments": 1287,
            "total_fragments": 1672,
            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Citrobacter arsenatis",
            "strain": "strain=LY-1",
            "accession": "GCA_004353845.1",
            "taxid": 2546350,
            "species_taxid": 2546350,
            "relation_to_type": "type",
            "validated": true,
            "ani": 89.9344,
            "matched_fragments": 1341,
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            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Salmonella enterica subsp. enterica",
            "strain": "strain=PartC-Senterica-RM8376",
            "accession": "GCA_022869965.1",
            "taxid": 59201,
            "species_taxid": 28901,
            "relation_to_type": "suspected-type",
            "validated": true,
            "ani": 82.88,
            "matched_fragments": 986,
            "total_fragments": 1672,
            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Citrobacter rodentium",
            "strain": "strain=DSM 16636",
            "accession": "GCA_021278985.1",
            "taxid": 67825,
            "species_taxid": 67825,
            "relation_to_type": "type",
            "validated": true,
            "ani": 82.8195,
            "matched_fragments": 1012,
            "total_fragments": 1672,
            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Shigella sonnei",
            "strain": "strain=ATCC 29930",
            "accession": "GCA_002950395.1",
            "taxid": 624,
            "species_taxid": 624,
            "relation_to_type": "type",
            "validated": true,
            "ani": 82.38,
            "matched_fragments": 925,
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            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=DSM 30083",
            "accession": "GCA_024519395.1",
            "taxid": 562,
            "species_taxid": 562,
            "relation_to_type": "neotype",
            "validated": true,
            "ani": 82.3361,
            "matched_fragments": 927,
            "total_fragments": 1672,
            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Pseudocitrobacter corydidari",
            "strain": "",
            "accession": "GCA_021172065.1",
            "taxid": 2891570,
            "species_taxid": 2891570,
            "relation_to_type": "type",
            "validated": true,
            "ani": 81.8515,
            "matched_fragments": 853,
            "total_fragments": 1672,
            "ani_threshold": 95,
            "status": "below_threshold"
        }
    ],
    "cc_result": {
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0
    },
    "gtdb_result": [
        {
            "accession": "GCF_003818115.1",
            "gtdb_species": "s__Citrobacter youngae",
            "ani": 95.3886,
            "matched_fragments": 1397,
            "total_fragments": 1672,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "97.80",
            "min_intra_species_ani": "95.31",
            "mean_intra_species_af": "0.91",
            "min_intra_species_af": "0.87",
            "num_clustered_genomes": 45,
            "status": "conclusive"
        },
        {
            "accession": "GCF_005281345.1",
            "gtdb_species": "s__Citrobacter sp005281345",
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            "matched_fragments": 1352,
            "total_fragments": 1672,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "97.53",
            "min_intra_species_ani": "97.53",
            "mean_intra_species_af": "0.86",
            "min_intra_species_af": "0.86",
            "num_clustered_genomes": 2,
            "status": "-"
        },
        {
            "accession": "GCF_018035235.1",
            "gtdb_species": "s__Citrobacter freundii_A",
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            "matched_fragments": 1299,
            "total_fragments": 1672,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "99.33",
            "min_intra_species_ani": "99.24",
            "mean_intra_species_af": "0.91",
            "min_intra_species_af": "0.90",
            "num_clustered_genomes": 6,
            "status": "-"
        },
        {
            "accession": "GCF_011064845.1",
            "gtdb_species": "s__Citrobacter freundii",
            "ani": 90.9102,
            "matched_fragments": 1339,
            "total_fragments": 1672,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "98.70",
            "min_intra_species_ani": "97.40",
            "mean_intra_species_af": "0.89",
            "min_intra_species_af": "0.80",
            "num_clustered_genomes": 446,
            "status": "-"
        },
        {
            "accession": "GCF_900079995.3",
            "gtdb_species": "s__Citrobacter europaeus",
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            "matched_fragments": 1340,
            "total_fragments": 1672,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "99.13",
            "min_intra_species_ani": "99.04",
            "mean_intra_species_af": "0.92",
            "min_intra_species_af": "0.90",
            "num_clustered_genomes": 21,
            "status": "-"
        },
        {
            "accession": "GCF_002075345.1",
            "gtdb_species": "s__Citrobacter braakii",
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            "matched_fragments": 1287,
            "total_fragments": 1672,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "98.63",
            "min_intra_species_ani": "96.30",
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            "min_intra_species_af": "0.77",
            "num_clustered_genomes": 154,
            "status": "-"
        },
        {
            "accession": "GCF_004353845.1",
            "gtdb_species": "s__Citrobacter freundii_E",
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            "matched_fragments": 1339,
            "total_fragments": 1672,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "99.27",
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            "mean_intra_species_af": "0.92",
            "min_intra_species_af": "0.92",
            "num_clustered_genomes": 2,
            "status": "-"
        },
        {
            "accession": "GCF_000155975.1",
            "gtdb_species": "s__Citrobacter portucalensis_A",
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            "matched_fragments": 1276,
            "total_fragments": 1672,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "100.00",
            "min_intra_species_ani": "100.00",
            "mean_intra_species_af": "1.00",
            "min_intra_species_af": "1.00",
            "num_clustered_genomes": 2,
            "status": "-"
        },
        {
            "accession": "GCA_000759755.1",
            "gtdb_species": "s__Citrobacter werkmanii",
            "ani": 89.0951,
            "matched_fragments": 1286,
            "total_fragments": 1672,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "96.76",
            "min_intra_species_ani": "96.01",
            "mean_intra_species_af": "0.88",
            "min_intra_species_af": "0.81",
            "num_clustered_genomes": 67,
            "status": "-"
        },
        {
            "accession": "GCF_018342065.1",
            "gtdb_species": "s__Citrobacter sp018342065",
            "ani": 88.0978,
            "matched_fragments": 1333,
            "total_fragments": 1672,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "N/A",
            "min_intra_species_ani": "N/A",
            "mean_intra_species_af": "N/A",
            "min_intra_species_af": "N/A",
            "num_clustered_genomes": 1,
            "status": "-"
        }
    ]
}