{
    "type": "genome",
    "identifier": "GCF_019048165.1",
    "organism": "Corynebacterium coyleae",
    "title": "Corynebacterium coyleae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019048165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16357567",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "53374",
        "species_taxid": "53374",
        "organism_name": "Corynebacterium coyleae",
        "infraspecific_name": "strain=FDAARGOS 1425",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/28",
        "asm_name": "ASM1904816v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_019048165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/048/165/GCF_019048165.1_ASM1904816v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2510261",
        "genome_size_ungapped": "2510261",
        "gc_percent": "61.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019048165.1-RS_2024_07_20",
        "annotation_date": "2024-07-20",
        "total_gene_count": "2427",
        "protein_coding_gene_count": "2320",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-28",
    "dateModified": "2021-06-28",
    "datePublished": "2021-06-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium coyleae"
        ],
        "sample_taxid": [
            "53374"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "0.705 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2510261",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2510261",
        "N50 (bp)": "2510261",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.4",
        "Number of CDSs": "2374",
        "Average Protein Length": "321.5",
        "Coding Ratio (%)": "91.2",
        "Number of rRNAs": "12",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Corynebacterium coyleae",
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                "accession": "GCA_019048165.1",
                "taxid": 53374,
                "species_taxid": 53374,
                "relation_to_type": "type",
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                "total_fragments": 836,
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            },
            {
                "organism_name": "Corynebacterium coyleae",
                "strain": "strain=DSM 44184",
                "accession": "GCA_900105505.1",
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                "species_taxid": 53374,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9996,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium lujinxingii",
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                "accession": "GCA_014490555.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 580,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium lujinxingii",
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                "species_taxid": 2763010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7924,
                "matched_fragments": 578,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium haemomassiliense",
                "strain": "strain=Marseille-Q3615",
                "accession": "GCA_013978595.1",
                "taxid": 2754726,
                "species_taxid": 2754726,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9542,
                "matched_fragments": 557,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium ihumii",
                "strain": "strain=GD7",
                "accession": "GCA_000403725.2",
                "taxid": 1232427,
                "species_taxid": 1232427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4165,
                "matched_fragments": 518,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium afermentans subsp. lipophilum",
                "strain": "strain=CCUG 32105",
                "accession": "GCA_015351335.1",
                "taxid": 144184,
                "species_taxid": 38286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4018,
                "matched_fragments": 528,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900105505.1",
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                "matched_fragments": 836,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.88",
                "min_intra_species_ani": "97.68",
                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014490555.1",
                "gtdb_species": "s__Corynebacterium sp014490555",
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                "matched_fragments": 582,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013978595.1",
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                "ani": 82.9849,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001807265.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
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                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
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            },
            {
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            },
            {
                "accession": "GCF_015351335.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900176865.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
        "doubling_h": -0.089,
        "growth_tmp": 37.0,
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        "optimum_ph": 7.292,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": 0.75,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Corynebacterium",
        "coyleae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}