{ "type": "genome", "identifier": "GCF_019049105.1", "organism": "Leucobacter chinensis", "title": "Leucobacter chinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019049105.1", "bioproject": "PRJNA224116", "biosample": "SAMN19820682", "wgs_master": "JAHQZR000000000.1", "refseq_category": "reference genome", "taxid": "2851010", "species_taxid": "2851010", "organism_name": "Leucobacter chinensis", "infraspecific_name": "strain=NC76-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/28", "asm_name": "ASM1904910v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_019049105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/049/105/GCF_019049105.1_ASM1904910v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2942897", "genome_size_ungapped": "2942897", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019049105.1-RS_2024_08_13", "annotation_date": "2024-08-13", "total_gene_count": "2693", "protein_coding_gene_count": "2628", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-28", "dateModified": "2021-06-28", "datePublished": "2021-06-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter chinensis" ], "sample_taxid": [ "2851010" ], "sample_host_organism": [ "maize" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Gansu" ], "sample_host_location_id": [], "data_size": "0.824 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2942897", "Number of Sequences": "23", "Longest Sequences (bp)": "416828", "N50 (bp)": "305446", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "2657", "Average Protein Length": "332.6", "Coding Ratio (%)": "90.1", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter chinensis", "strain": "strain=NC76-1", "accession": "GCA_019049105.1", "taxid": 2851010, "species_taxid": 2851010, 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"strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 76.9331, "matched_fragments": 123, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces lapidis", "strain": "strain=JCM 14321", "accession": "GCA_009749405.1", "taxid": 279574, "species_taxid": 279574, "relation_to_type": "type", "validated": true, "ani": 76.8785, "matched_fragments": 159, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces agglutinans", "strain": "strain=CFH 90414", "accession": "GCA_009647605.1", "taxid": 2662258, "species_taxid": 2662258, "relation_to_type": "type", "validated": true, "ani": 76.8771, "matched_fragments": 146, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycetocola zhadangensis", "strain": "strain=ZD1-4", "accession": "GCA_003668565.1", 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