{ "type": "genome", "identifier": "GCF_019061145.1", "organism": "Anianabacter salinae", "title": "Anianabacter salinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF THE BASQUE COUNTRY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019061145.1", "bioproject": "PRJNA224116", "biosample": "SAMN19821013", "wgs_master": "JAHQZS000000000.1", "refseq_category": "reference genome", "taxid": "2851023", "species_taxid": "2851023", "organism_name": "Anianabacter salinae", "infraspecific_name": "strain=ASV31", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/29", "asm_name": "ASM1906114v1", "asm_submitter": "UNIVERSITY OF THE BASQUE COUNTRY", "gbrs_paired_asm": "GCA_019061145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/061/145/GCF_019061145.1_ASM1906114v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3641124", "genome_size_ungapped": "3641124", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019061145.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3629", "protein_coding_gene_count": "3559", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-29", "dateModified": "2021-06-29", "datePublished": "2021-06-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Anianabacter salinae" ], "sample_taxid": [ "2851023" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Salinas de Anana" ], "sample_host_location_id": [], "data_size": "0.998 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3641124", "Number of Sequences": "15", "Longest Sequences (bp)": "943289", "N50 (bp)": "884227", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.7", "Number of CDSs": "3581", "Average Protein Length": "311.2", "Coding Ratio (%)": "91.8", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodovulum marinum", "strain": "strain=DSM 18063", "accession": "GCA_004343075.1", "taxid": 320662, "species_taxid": 320662, "relation_to_type": "type", "validated": true, "ani": 79.1997, "matched_fragments": 510, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=22DY15", "accession": "GCA_002094875.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 79.0692, "matched_fragments": 354, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 79.0045, "matched_fragments": 486, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 78.9597, "matched_fragments": 494, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 78.8606, "matched_fragments": 487, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 78.8558, "matched_fragments": 415, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutimaribacter saemankumensis", "strain": "strain=DSM 28010", "accession": "GCA_900100005.1", "taxid": 490829, "species_taxid": 490829, "relation_to_type": "type", "validated": true, "ani": 78.6869, "matched_fragments": 456, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 78.6706, "matched_fragments": 514, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum visakhapatnamense", "strain": "strain=JA181", "accession": "GCA_004365965.1", "taxid": 364297, "species_taxid": 364297, "relation_to_type": "type", "validated": true, "ani": 78.6285, "matched_fragments": 501, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=CGMCC 1.7290", "accession": "GCA_900101505.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 78.593, "matched_fragments": 509, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum sulfidophilum", "strain": "strain=DSM 1374", "accession": "GCA_000520135.2", "taxid": 35806, "species_taxid": 35806, "relation_to_type": "type", "validated": true, "ani": 78.5688, "matched_fragments": 466, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5683, "matched_fragments": 515, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter harenae", "strain": "strain=DP07", "accession": "GCA_009882975.1", "taxid": 2606218, "species_taxid": 2606218, "relation_to_type": "type", "validated": true, "ani": 78.5313, "matched_fragments": 483, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum sulfidophilum", "strain": "strain=DSM 1374", "accession": "GCA_001633165.1", "taxid": 35806, "species_taxid": 35806, "relation_to_type": "type", "validated": true, "ani": 78.5288, "matched_fragments": 471, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 78.5096, "matched_fragments": 519, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum dunhuangense", "strain": "strain=YYQ-30", "accession": "GCA_013093415.1", "taxid": 1505036, "species_taxid": 1505036, "relation_to_type": "type", "validated": true, "ani": 78.5003, "matched_fragments": 407, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia saemankumensis", "strain": "strain=DSM 100565", "accession": "GCA_900141735.1", "taxid": 1447782, "species_taxid": 1447782, "relation_to_type": "type", "validated": true, "ani": 78.4608, "matched_fragments": 442, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kangsaoukella pontilimi", "strain": "strain=GH1-50", "accession": "GCA_009830125.1", "taxid": 2691042, "species_taxid": 2691042, "relation_to_type": "type", "validated": true, "ani": 78.4298, "matched_fragments": 418, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoroseicyclus aestuarii", "strain": "strain=CECT 9025", "accession": "GCA_003217255.1", "taxid": 1795041, "species_taxid": 1795041, "relation_to_type": "type", "validated": true, "ani": 78.3714, "matched_fragments": 405, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silicimonas algicola", "strain": "strain=KC90", "accession": "GCA_003970735.1", "taxid": 1826607, "species_taxid": 1826607, "relation_to_type": "type", "validated": true, "ani": 78.3317, "matched_fragments": 413, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger aestuarii", "strain": "strain=AD8", "accession": "GCA_008930655.1", "taxid": 568098, "species_taxid": 568098, "relation_to_type": "type", "validated": true, "ani": 78.3204, "matched_fragments": 387, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silicimonas algicola", "strain": "strain=DSM 103371", "accession": "GCA_003148765.1", "taxid": 1826607, "species_taxid": 1826607, "relation_to_type": "type", "validated": true, "ani": 78.2911, "matched_fragments": 415, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava sediminum", "strain": "strain=TAW-CT134", "accession": "GCA_002020355.1", "taxid": 1915319, "species_taxid": 1915319, "relation_to_type": "type", "validated": true, "ani": 78.2272, "matched_fragments": 387, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger aestuarii", "strain": "strain=DSM 22011", "accession": "GCA_003259905.1", "taxid": 568098, "species_taxid": 568098, "relation_to_type": "type", "validated": true, "ani": 78.2195, "matched_fragments": 394, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava atlantica", "strain": "strain=13D2W-2", "accession": "GCA_000737065.1", "taxid": 1317124, "species_taxid": 1317124, "relation_to_type": "type", "validated": true, "ani": 78.217, "matched_fragments": 395, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 78.1899, "matched_fragments": 416, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus ximenensis", "strain": "strain=T1lg56", "accession": "GCA_003056725.1", "taxid": 1911570, "species_taxid": 1911570, "relation_to_type": "type", "validated": true, "ani": 78.0584, "matched_fragments": 410, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 77.9482, "matched_fragments": 399, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium lipolyticum", "strain": "strain=CECT 8621", "accession": "GCA_900184935.1", "taxid": 1524263, "species_taxid": 1524263, "relation_to_type": "type", "validated": true, "ani": 77.0026, "matched_fragments": 241, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_019061145.1", "gtdb_species": "s__ASV31 sp019061145", "ani": 100.0, "matched_fragments": 1205, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__ASV31", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002701395.1", "gtdb_species": "s__Rhodobacter_B sp002701395", "ani": 79.3389, "matched_fragments": 595, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017792445.1", "gtdb_species": "s__Rhodobacter_B sp017792445", "ani": 79.2434, "matched_fragments": 604, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018139985.1", "gtdb_species": "s__JAGSOU01 sp018139985", "ani": 79.2356, "matched_fragments": 530, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__JAGSOU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004343075.1", "gtdb_species": "s__Rhodovulum marinum", "ani": 79.1872, "matched_fragments": 511, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900107235.1", "gtdb_species": "s__Citreimonas salinaria", "ani": 79.1795, "matched_fragments": 501, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Citreimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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"gtdb_species": "s__Rhodovulum steppense", "ani": 78.9599, "matched_fragments": 494, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109035.1", "gtdb_species": "s__Cribrihabitans marinus", "ani": 78.9362, "matched_fragments": 505, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cribrihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002797755.1", "gtdb_species": "s__Brevirhabdus pacifica", "ani": 78.8575, "matched_fragments": 416, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Brevirhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_009649175.1", "gtdb_species": "s__Rhodovulum strictum", "ani": 78.814, "matched_fragments": 492, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003053725.1", "gtdb_species": "s__Rhodovulum kholense", "ani": 78.7999, "matched_fragments": 502, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900172355.1", "gtdb_species": "s__Oceanicola antarcticus", "ani": 78.6871, "matched_fragments": 492, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Oceanicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001975705.1", "gtdb_species": "s__Salipiger abyssi", "ani": 78.6528, "matched_fragments": 491, 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