{
    "type": "genome",
    "identifier": "GCF_019061225.1",
    "organism": "Haloarcula salina",
    "title": "Haloarcula salina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Sevilla, Spain",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019061225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN19844807",
        "wgs_master": "JAHQXE000000000.1",
        "refseq_category": "na",
        "taxid": "1429914",
        "species_taxid": "1429914",
        "organism_name": "Haloarcula salina",
        "infraspecific_name": "strain=JCM 18369",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/29",
        "asm_name": "ASM1906122v1",
        "asm_submitter": "University of Sevilla, Spain",
        "gbrs_paired_asm": "GCA_019061225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/061/225/GCF_019061225.1_ASM1906122v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3798620",
        "genome_size_ungapped": "3798620",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019061225.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3895",
        "protein_coding_gene_count": "3825",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-29",
    "dateModified": "2021-06-29",
    "datePublished": "2021-06-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haloarcula salina"
        ],
        "sample_taxid": [
            "1429914"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.033 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3798620",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "1148033",
        "N50 (bp)": "594909",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.7",
        "Number of CDSs": "3819",
        "Average Protein Length": "292.7",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halomicroarcula salina",
                "strain": "strain=JCM 18369",
                "accession": "GCA_019061225.1",
                "taxid": 1429914,
                "species_taxid": 1429914,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1259,
                "total_fragments": 1259,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halomicroarcula salina",
                "strain": "strain=YGHS18",
                "accession": "GCA_010119195.1",
                "taxid": 1429914,
                "species_taxid": 1429914,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.994,
                "matched_fragments": 1250,
                "total_fragments": 1259,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haloarcula amylolytica",
                "strain": "strain=JCM 13557",
                "accession": "GCA_000336615.1",
                "taxid": 396317,
                "species_taxid": 396317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1099,
                "matched_fragments": 838,
                "total_fragments": 1259,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloarcula mannanilytica",
                "strain": "strain=MD130-1",
                "accession": "GCA_005406125.1",
                "taxid": 2509225,
                "species_taxid": 2509225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1093,
                "matched_fragments": 873,
                "total_fragments": 1259,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloarcula rubripromontorii",
                "strain": "strain=SL3",
                "accession": "GCA_001280425.1",
                "taxid": 1705562,
                "species_taxid": 1705562,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8853,
                "matched_fragments": 818,
                "total_fragments": 1259,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloarcula hispanica",
                "strain": "strain=CGMCC 1.2049",
                "accession": "GCA_000223905.1",
                "taxid": 51589,
                "species_taxid": 51589,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8477,
                "matched_fragments": 833,
                "total_fragments": 1259,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloarcula salaria",
                "strain": "strain=JCM 15759",
                "accession": "GCA_014647095.1",
                "taxid": 575195,
                "species_taxid": 575195,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3182,
                "matched_fragments": 767,
                "total_fragments": 1259,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloarcula sebkhae",
                "strain": "strain=JCM 19018",
                "accession": "GCA_014647415.1",
                "taxid": 932660,
                "species_taxid": 932660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2617,
                "matched_fragments": 792,
                "total_fragments": 1259,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomicroarcula limicola",
                "strain": "strain=YGHS32",
                "accession": "GCA_010119205.1",
                "taxid": 1429915,
                "species_taxid": 1429915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5555,
                "matched_fragments": 755,
                "total_fragments": 1259,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomicroarcula nitratireducens",
                "strain": "strain=F27",
                "accession": "GCA_019599505.1",
                "taxid": 2487749,
                "species_taxid": 2487749,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4631,
                "matched_fragments": 745,
                "total_fragments": 1259,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010119195.1",
                "gtdb_species": "s__Haloarcula salina",
                "ani": 99.994,
                "matched_fragments": 1250,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_005406125.1",
                "gtdb_species": "s__Haloarcula sp005406125",
                "ani": 84.1093,
                "matched_fragments": 873,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000336615.1",
                "gtdb_species": "s__Haloarcula amylolytica",
                "ani": 84.0625,
                "matched_fragments": 843,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.3005,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001280425.1",
                "gtdb_species": "s__Haloarcula rubripromontorii",
                "ani": 83.8968,
                "matched_fragments": 817,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "99.01",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000223905.1",
                "gtdb_species": "s__Haloarcula hispanica",
                "ani": 83.8448,
                "matched_fragments": 833,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.3005,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_002844335.1",
                "gtdb_species": "s__Haloarcula taiwanensis",
                "ani": 83.8197,
                "matched_fragments": 799,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_008729015.1",
                "gtdb_species": "s__Haloarcula sp008729015",
                "ani": 83.404,
                "matched_fragments": 804,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014647415.1",
                "gtdb_species": "s__Haloarcula sebkhae",
                "ani": 83.2807,
                "matched_fragments": 790,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.2413,
                "mean_intra_species_ani": "95.97",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000336895.1",
                "gtdb_species": "s__Haloarcula argentinensis",
                "ani": 83.1086,
                "matched_fragments": 791,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.2413,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_010119205.1",
                "gtdb_species": "s__Halomicroarcula limicola",
                "ani": 82.5958,
                "matched_fragments": 751,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halomicroarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003021755.1",
                "gtdb_species": "s__Halomicroarcula sp003021755",
                "ani": 81.1952,
                "matched_fragments": 401,
                "total_fragments": 1259,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halomicroarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.169,
        "cell_length": 0.171,
        "doubling_h": 0.771,
        "growth_tmp": 37.833,
        "optimum_tmp": 40.964,
        "optimum_ph": 6.787,
        "genome_size": 4174401.837,
        "gc_content": 59.226,
        "coding_genes": 3993.8,
        "rRNA16S_genes": 3.166,
        "tRNA_genes": 47.666,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.333,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.1,
        "aerobic_respiration": 0.9,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Haloarcula",
        "salina"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}