{ "type": "genome", "identifier": "GCF_019084045.1", "organism": "Paeniglutamicibacter quisquiliarum", "title": "Paeniglutamicibacter quisquiliarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chulalongkorn University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019084045.1", "bioproject": "PRJNA224116", "biosample": "SAMN19736493", "wgs_master": "JAHRED000000000.1", "refseq_category": "reference genome", "taxid": "2849498", "species_taxid": "2849498", "organism_name": "Paeniglutamicibacter quisquiliarum", "infraspecific_name": "strain=ABSL32-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/30", "asm_name": "ASM1908404v1", "asm_submitter": "Chulalongkorn University", "gbrs_paired_asm": "GCA_019084045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/084/045/GCF_019084045.1_ASM1908404v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4439639", "genome_size_ungapped": "4439639", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-08", "total_gene_count": "4039", "protein_coding_gene_count": "3945", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-30", "dateModified": "2021-06-30", "datePublished": "2021-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Paeniglutamicibacter quisquiliarum" ], "sample_taxid": [ "2849498" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Suphanburi" ], "sample_host_location_id": [], "data_size": "1.229 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4439639", "Number of Sequences": "35", "Longest Sequences (bp)": "791052", "N50 (bp)": "322939", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.0", "Number of CDSs": "4041", "Average Protein Length": "321.6", "Coding Ratio (%)": "87.8", "Number of rRNAs": "4", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paeniglutamicibacter psychrophenolicus", "strain": "strain=DSM 15454", "accession": "GCA_017876575.1", "taxid": 257454, "species_taxid": 257454, "relation_to_type": "type", "validated": true, "ani": 86.4743, "matched_fragments": 1080, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter gangotriensis", "strain": "strain=Lz1y", "accession": "GCA_000348945.1", "taxid": 254787, "species_taxid": 254787, "relation_to_type": "type", "validated": true, "ani": 83.4964, "matched_fragments": 888, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter kerguelensis", "strain": "strain=DSM 15797", "accession": "GCA_017876535.1", "taxid": 254788, "species_taxid": 254788, "relation_to_type": "type", "validated": true, "ani": 83.3766, "matched_fragments": 856, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter terrestris", "strain": "strain=ANT13_2", "accession": "GCA_012271785.1", "taxid": 2723403, "species_taxid": 2723403, "relation_to_type": "type", "validated": true, "ani": 82.2277, "matched_fragments": 852, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter cryotolerans", "strain": "strain=DSM 22826", "accession": "GCA_014190875.1", "taxid": 670079, "species_taxid": 670079, "relation_to_type": "type", "validated": true, "ani": 80.6509, "matched_fragments": 588, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter protophormiae", "strain": "strain=JCM 1973", "accession": "GCA_014647495.1", "taxid": 37930, "species_taxid": 37930, "relation_to_type": "type", "validated": true, "ani": 80.128, "matched_fragments": 530, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 78.9962, "matched_fragments": 456, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.7951, "matched_fragments": 349, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.7742, "matched_fragments": 351, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.3622, "matched_fragments": 295, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.3411, "matched_fragments": 297, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 78.0345, "matched_fragments": 305, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_019084045.1", "gtdb_species": "s__Paeniglutamicibacter sp019084045", "ani": 100.0, "matched_fragments": 1462, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001863355.1", "gtdb_species": "s__Paeniglutamicibacter sp001863355", "ani": 87.0131, "matched_fragments": 1100, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876575.1", "gtdb_species": "s__Paeniglutamicibacter psychrophenolicus", "ani": 86.4701, "matched_fragments": 1081, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003287975.1", "gtdb_species": "s__Paeniglutamicibacter sp003287975", "ani": 86.2673, "matched_fragments": 1047, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000348945.1", "gtdb_species": "s__Paeniglutamicibacter gangotriensis", "ani": 83.5022, "matched_fragments": 887, 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"total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900010755.1", "gtdb_species": "s__Paeniglutamicibacter antarcticus_A", "ani": 82.1192, "matched_fragments": 768, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.447, "cell_length": 0.127, "doubling_h": null, "growth_tmp": 22.916, "optimum_tmp": 20.125, "optimum_ph": 7.5, "genome_size": 4338023.5, "gc_content": 63.0, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.25, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paeniglutamicibacter", "quisquiliarum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }