{ "type": "genome", "identifier": "GCF_019130065.1", "organism": "Pinibacter aurantiacus", "title": "Pinibacter aurantiacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019130065.1", "bioproject": "PRJNA224116", "biosample": "SAMN19836732", "wgs_master": "JAHSPG000000000.1", "refseq_category": "reference genome", "taxid": "2851599", "species_taxid": "2851599", "organism_name": "Pinibacter aurantiacus", "infraspecific_name": "strain=MAH-26", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/06", "asm_name": "ASM1913006v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_019130065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/130/065/GCF_019130065.1_ASM1913006v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6857405", "genome_size_ungapped": "6857405", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019130065.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5250", "protein_coding_gene_count": "5183", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-06", "dateModified": "2021-07-06", "datePublished": "2021-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pinibacter aurantiacus" ], "sample_taxid": [ "2851599" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Anseong-si" ], "sample_host_location_id": [], "data_size": "1.945 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6857405", "Number of Sequences": "22", "Longest Sequences (bp)": "884953", "N50 (bp)": "585073", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.6", "Number of CDSs": "5165", "Average Protein Length": "377.5", "Coding Ratio (%)": "85.3", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pinibacter aurantiacus", "strain": "strain=MAH-26", "accession": "GCA_019130065.1", "taxid": 2851599, "species_taxid": 2851599, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2274, "total_fragments": 2275, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavihumibacter rivuli", "strain": "strain=IMCC34838", "accession": "GCA_018595685.2", "taxid": 2838156, "species_taxid": 2838156, "relation_to_type": "type", "validated": true, "ani": 76.7267, "matched_fragments": 68, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferruginibacter albus", "strain": "strain=KIS38-8", "accession": "GCA_020042285.1", "taxid": 2875540, "species_taxid": 2875540, "relation_to_type": "type", "validated": true, "ani": 76.6137, "matched_fragments": 73, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_002077935.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 76.4419, "matched_fragments": 119, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavisolibacter nicotianae", "strain": "strain=X7X", "accession": "GCA_003628535.1", "taxid": 2364882, "species_taxid": 2364882, "relation_to_type": "type", "validated": true, "ani": 76.3846, "matched_fragments": 62, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=GR20-10", "accession": "GCA_000246855.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 76.3588, "matched_fragments": 113, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter ginsenosidivorans", "strain": "strain=Gsoil1550", "accession": "GCA_007971225.1", "taxid": 1813871, "species_taxid": 1813871, "relation_to_type": "type", "validated": true, "ani": 76.2826, "matched_fragments": 86, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_900110245.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 76.245, "matched_fragments": 120, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella populi", "strain": "strain=CCTCC AB 208238", "accession": "GCA_002078015.1", "taxid": 550983, "species_taxid": 550983, "relation_to_type": "type", "validated": true, "ani": 76.2353, "matched_fragments": 112, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=DSM 17620", "accession": "GCA_002077985.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 76.2298, "matched_fragments": 113, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraflavitalea soli", "strain": "strain=5GH32-13", "accession": "GCA_003555545.1", "taxid": 2315862, "species_taxid": 2315862, "relation_to_type": "type", "validated": true, "ani": 76.2003, "matched_fragments": 96, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacibacter luteus", "strain": "strain=TTM-7", "accession": "GCA_004118265.1", "taxid": 2508719, "species_taxid": 2508719, "relation_to_type": "type", "validated": true, "ani": 76.1697, "matched_fragments": 106, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas effusa", "strain": "strain=TTM-71", "accession": "GCA_004118675.1", "taxid": 2508721, "species_taxid": 2508721, "relation_to_type": "type", "validated": true, "ani": 76.1399, "matched_fragments": 73, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deminuibacter soli", "strain": "strain=K23C18032701", "accession": "GCA_003412455.1", "taxid": 2291815, "species_taxid": 2291815, "relation_to_type": "type", "validated": true, "ani": 76.1228, "matched_fragments": 105, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter solisilvae", "strain": "strain=3-3", "accession": "GCA_000814475.1", "taxid": 1349421, "species_taxid": 1349421, "relation_to_type": "type", "validated": true, "ani": 76.0435, "matched_fragments": 91, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium goheungense", "strain": "strain=DSM 28323", "accession": "GCA_004361915.1", "taxid": 1086393, "species_taxid": 1086393, "relation_to_type": "type", "validated": true, "ani": 76.0286, "matched_fragments": 80, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Segetibacter koreensis", "strain": "strain=DSM 18137", "accession": "GCA_000374045.1", "taxid": 398037, "species_taxid": 398037, "relation_to_type": "type", "validated": true, "ani": 76.0236, "matched_fragments": 61, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter microcysteis", "strain": "strain=DH6", "accession": "GCA_015831355.1", "taxid": 2793269, "species_taxid": 2793269, "relation_to_type": "type", "validated": true, "ani": 76.0027, "matched_fragments": 68, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium roseum", "strain": "strain=SYL130", "accession": "GCA_009939005.1", "taxid": 1978412, "species_taxid": 1978412, "relation_to_type": "type", "validated": true, "ani": 75.8929, "matched_fragments": 70, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilyomonas limi", "strain": "strain=17mud1-8", "accession": "GCA_005233845.1", "taxid": 2575867, "species_taxid": 2575867, "relation_to_type": "type", "validated": true, "ani": 75.8072, "matched_fragments": 70, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas zeae", "strain": "strain=CGMCC 1.15290", "accession": "GCA_014641615.1", "taxid": 1737353, "species_taxid": 1737353, "relation_to_type": "type", "validated": true, "ani": 75.7465, "matched_fragments": 89, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobacter ginsenosidimutans", "strain": "strain=Gsoil 221", "accession": "GCA_007970185.1", "taxid": 661488, "species_taxid": 661488, "relation_to_type": "type", "validated": true, "ani": 75.7214, "matched_fragments": 99, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga hostae", "strain": "strain=2R12", "accession": "GCA_018224885.1", "taxid": 2831022, "species_taxid": 2831022, "relation_to_type": "type", "validated": true, "ani": 75.6679, "matched_fragments": 76, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga vietnamensis", "strain": "strain=BD 01", "accession": "GCA_902167635.1", "taxid": 2593957, "species_taxid": 2593957, "relation_to_type": "type", "validated": true, "ani": 75.6402, "matched_fragments": 63, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_019130065.1", "gtdb_species": "s__Parasegetibacter sp019130065", "ani": 100.0, "matched_fragments": 2274, "total_fragments": 2275, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Parasegetibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018595685.1", "gtdb_species": "s__Flavihumibacter sp018595685", 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