{ "type": "genome", "identifier": "GCF_019132845.1", "organism": "Advenella alkanexedens", "title": "Advenella alkanexedens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "YUNNAN UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019132845.1", "bioproject": "PRJNA224116", "biosample": "SAMN19967794", "wgs_master": "JAHSPR000000000.1", "refseq_category": "reference genome", "taxid": "1481665", "species_taxid": "1481665", "organism_name": "Advenella alkanexedens", "infraspecific_name": "strain=LAM0050", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/06", "asm_name": "ASM1913284v1", "asm_submitter": "YUNNAN UNIVERSITY", "gbrs_paired_asm": "GCA_019132845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/132/845/GCF_019132845.1_ASM1913284v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2991300", "genome_size_ungapped": "2991300", "gc_percent": "50.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019132845.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "2854", "protein_coding_gene_count": "2767", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-06", "dateModified": "2021-07-06", "datePublished": "2021-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Advenella alkanexedens" ], "sample_taxid": [ "1481665" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "unknown" ], "sample_host_location_id": [], "data_size": "0.849 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2991300", "Number of Sequences": "20", "Longest Sequences (bp)": "531785", "N50 (bp)": "317958", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.8", "Number of CDSs": "2792", "Average Protein Length": "319.4", "Coding Ratio (%)": "89.4", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Advenella alkanexedens", "strain": "strain=LAM0050", "accession": "GCA_019132845.1", "taxid": 1481665, "species_taxid": 1481665, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 985, "total_fragments": 986, "ani_threshold": 95, 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"GCA_000219915.3", "taxid": 310575, "species_taxid": 310575, "relation_to_type": "type", "validated": true, "ani": 76.9077, "matched_fragments": 145, "total_fragments": 986, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_019132845.1", "gtdb_species": "s__Advenella alkanexedens", "ani": 100.0, "matched_fragments": 985, "total_fragments": 986, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Advenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.76", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_014652395.1", "gtdb_species": "s__Advenella faeciporci", "ani": 90.267, "matched_fragments": 825, "total_fragments": 986, "gtdb_taxonomy": 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