{ "type": "genome", "identifier": "GCF_019132875.1", "organism": "Erwinia phyllosphaerae", "title": "Erwinia phyllosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Microbial Culture Collection Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019132875.1", "bioproject": "PRJNA224116", "biosample": "SAMN19908003", "wgs_master": "JAHSPF000000000.1", "refseq_category": "reference genome", "taxid": "2853256", "species_taxid": "2853256", "organism_name": "Erwinia phyllosphaerae", "infraspecific_name": "strain=CMYE1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/06", "asm_name": "ASM1913287v1", "asm_submitter": "Guangdong Microbial Culture Collection Center", "gbrs_paired_asm": "GCA_019132875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/132/875/GCF_019132875.1_ASM1913287v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4731600", "genome_size_ungapped": "4731600", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019132875.1-RS_2024_05_07", "annotation_date": "2024-05-07", "total_gene_count": "4358", "protein_coding_gene_count": "4231", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-06", "dateModified": "2021-07-06", "datePublished": "2021-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Erwinia phyllosphaerae" ], "sample_taxid": [ "2853256" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangdong Province" ], "sample_host_location_id": [], "data_size": "1.336 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 28.0, "max": 28.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4731600", "Number of Sequences": "34", "Longest Sequences (bp)": "765537", "N50 (bp)": "413798", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.8", "Number of CDSs": "4285", "Average Protein Length": "319.1", "Coding Ratio (%)": "86.7", "Number of rRNAs": "1", "Number of tRNAs": "62", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erwinia phyllosphaerae", "strain": "strain=CMYE1", "accession": "GCA_019132875.1", "taxid": 2853256, "species_taxid": 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"matched_fragments": 666, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta gaviniae", "strain": "strain=DSM 22758", "accession": "GCA_002953195.1", "taxid": 665914, "species_taxid": 665914, "relation_to_type": "type", "validated": true, "ani": 80.0468, "matched_fragments": 714, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia piriflorinigrans", "strain": "strain=CFBP 5888", "accession": "GCA_001050515.1", "taxid": 665097, "species_taxid": 665097, "relation_to_type": "type", "validated": true, "ani": 80.0029, "matched_fragments": 567, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta calida", "strain": "strain=LMG 25383", "accession": "GCA_002095355.1", "taxid": 665913, "species_taxid": 665913, "relation_to_type": "type", "validated": true, "ani": 80.0004, "matched_fragments": 652, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia persicina", "strain": "strain=NBRC 102418", "accession": "GCA_001571305.1", "taxid": 55211, "species_taxid": 55211, "relation_to_type": "type", "validated": true, "ani": 79.8242, "matched_fragments": 655, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia tasmaniensis", "strain": "strain=Et1/99", "accession": "GCA_000026185.1", "taxid": 338565, "species_taxid": 338565, "relation_to_type": "type", "validated": true, "ani": 79.7847, "matched_fragments": 607, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia pyrifoliae", "strain": "strain=DSM 12163", "accession": "GCA_000026985.1", "taxid": 79967, "species_taxid": 79967, "relation_to_type": "type", "validated": true, "ani": 79.7472, "matched_fragments": 588, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia amylovora", 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