# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_72	LOCUS_00720	sequence1:81389..81592(+)	partial			WP_010918078.1	zinc-finger domain-containing protein	73.1	54.5	49.0
MGA_112	LOCUS_01120	sequence1:127416..127865(+)	partial			WP_011387869.1	A24 family peptidase	100.0	71.6	81.2
MGA_113	LOCUS_01130	sequence1:127984..128205(+)	frameshift		128124	WP_011387870.1	type II and III secretion system protein	68.5	9.1	98.0
MGA_184	LOCUS_01830	sequence1:210955..211317(-)	internal_stop_codon	210955..210957(-)		WP_011082877.1	lytic transglycosylase domain-containing protein	75.8	30.1	70.3
MGA_397	LOCUS_03940	sequence1:457314..457865(+)	partial			WP_011974823.1	SH3 domain-containing protein	59.6	51.4	36.3
MGA_456	LOCUS_04530	sequence1:506617..508698(-)	frameshift		508775	WP_011388193.1	LPS assembly protein LptD	100.0	78.2	100.0
MGA_457	LOCUS_04540	sequence1:508668..509276(-)	frameshift		508772	WP_011388193.1	LPS assembly protein LptD	83.2	19.0	72.6
MGA_573	LOCUS_05670	sequence1:641028..642260(-)	frameshift		642264	WP_011388303.1	flagellar basal-body MS-ring/collar protein FliF	100.0	74.4	96.6
MGA_632	LOCUS_06260	sequence1:717264..717443(+)	partial			WP_011388362.1	hypothetical protein	64.4	64.4	100.0
MGA_780	LOCUS_07740	sequence1:873605..875020(+)	frameshift,internal_stop_codon	873550..873552(+)	873937,873683,873588,873705,874699,873646	WP_011388504.1	helix-turn-helix domain-containing protein	74.9	69.2	84.7
MGA_781	LOCUS_07750	sequence1:874957..875169(+)	frameshift		874696,874828,874702,874958	WP_011388504.1	helix-turn-helix domain-containing protein	100.0	13.7	98.6
MGA_843	LOCUS_08360	sequence1:960302..960652(-)	partial			WP_011090988.1	P-type conjugative transfer protein TrbG	71.6	23.1	88.0
MGA_853	LOCUS_08460	sequence1:967758..968882(-)	internal_stop_codon	968907..968909(-)		WP_172645922.1	conjugal transfer protein TraG	100.0	56.2	70.5
MGA_854	LOCUS_08470	sequence1:968907..969749(-)	internal_stop_codon	968907..968909(-)		WP_018269525.1	conjugal transfer protein TraG	100.0	42.4	82.5
MGA_858	LOCUS_08510	sequence1:973313..974023(+)	partial			WP_044329672.1	IS256 family transposase	73.7	42.8	90.2
MGA_866	LOCUS_08590	sequence1:979935..980129(-)	frameshift		980187	WP_044329672.1	IS256 family transposase	100.0	15.7	92.2
MGA_867	LOCUS_08600	sequence1:980344..980640(+)	frameshift		980556	WP_150098959.1	IS256 family transposase	87.8	47.8	66.3
MGA_869	LOCUS_08620	sequence1:981036..981245(+)	partial			WP_011388561.1	ABC transporter ATP-binding protein	75.4	20.6	80.8
MGA_891	LOCUS_08820	sequence1:1011996..1012148(+)	frameshift		1011874,1011979	WP_011390097.1	WcbI family polysaccharide biosynthesis putative acetyltransferase	100.0	17.0	100.0
MGA_895	LOCUS_08860	sequence1:1015243..1015677(-)	partial			WP_011388577.1	lasso peptide biosynthesis B2 protein	54.2	51.3	41.0
MGA_941	LOCUS_09320	sequence1:1072928..1073152(+)	partial			WP_011388652.1	antitoxin MazE family protein	71.6	71.6	96.2
MGA_1009	LOCUS_10000	sequence1:1147659..1147964(-)	partial			WP_011388717.1	GNAT family N-acetyltransferase	100.0	61.6	95.0
MGA_1084	LOCUS_10750	sequence1:1226130..1227857(-)	partial			WP_011388790.1	EAL domain-containing protein	100.0	62.7	99.8
MGA_1092	LOCUS_10830	sequence1:1236163..1236405(-)	partial			WP_011388798.1	30S ribosomal protein S21	66.2	66.2	100.0
MGA_1126	LOCUS_11170	sequence1:1266183..1266482(-)	frameshift,internal_stop_codon	1266697..1266699(-)	1266400,1266657,1266610,1266571	WP_011388830.1	OmpA family protein	100.0	19.8	100.0
MGA_1127	LOCUS_11180	sequence1:1266401..1267687(-)	frameshift,internal_stop_codon	1266401..1266403(-)	1266568,1266610,1266400	WP_011388830.1	OmpA family protein	79.7	68.1	66.0
MGA_1145	LOCUS_11360	sequence1:1281662..1282687(+)	partial			WP_011388848.1	cell envelope integrity protein TolA	47.8	47.8	100.0
MGA_1179	LOCUS_11700	sequence1:1327633..1328061(+)	frameshift		1327950	WP_085977019.1	IS5-like element ISRhru5 family transposase	78.9	44.3	98.2
MGA_1180	LOCUS_11710	sequence1:1327980..1328393(+)	frameshift		1327950	WP_085977019.1	IS5-like element ISRhru5 family transposase	100.0	54.2	100.0
MGA_1243	LOCUS_12330	sequence1:1398095..1399615(-)	partial			WP_011388936.1	signal recognition particle-docking protein FtsY	70.2	70.2	97.7
MGA_1294	LOCUS_12840	sequence1:1452725..1454473(-)	partial			WP_014626129.1	divergent polysaccharide deacetylase family protein	55.7	55.8	97.5
MGA_1349	LOCUS_13390	sequence1:1516594..1517481(+)	partial			WP_011389040.1	trypsin-like peptidase domain-containing protein	100.0	19.8	99.7
MGA_1470	LOCUS_14600	sequence1:1658382..1659710(+)	partial			WP_011389158.1	methyl-accepting chemotaxis protein	100.0	72.3	90.3
MGA_1496	LOCUS_14860	sequence1:1689265..1689612(+)	partial			WP_011389184.1	hypothetical protein	73.9	73.9	100.0
MGA_1582	LOCUS_15720	sequence1:1789336..1789713(-)	frameshift		1789805	WP_085977020.1	IS5-like element ISRhru6 family transposase	100.0	44.6	89.6
MGA_1583	LOCUS_15730	sequence1:1789710..1790177(-)	frameshift		1789805	WP_085977020.1	IS5-like element ISRhru6 family transposase	82.6	45.7	98.4
MGA_1584	LOCUS_15740	sequence1:1790439..1791155(+)	internal_stop_codon	1791153..1791155(+)		WP_011389933.1	IS66-like element ISRhru2 family transposase	100.0	53.0	94.5
MGA_1585	LOCUS_15750	sequence1:1791162..1791578(+)	frameshift,internal_stop_codon	1791153..1791155(+)	1791551	WP_011389933.1	IS66-like element ISRhru2 family transposase	95.7	29.4	97.0
MGA_1586	LOCUS_15760	sequence1:1791548..1791790(+)	frameshift		1791551	WP_011389933.1	IS66-like element ISRhru2 family transposase	97.5	17.4	98.7
MGA_1745	LOCUS_17350	sequence1:1962552..1962743(-)	partial			WP_014626221.1	hypothetical protein	100.0	62.4	98.4
MGA_1853	LOCUS_18430	sequence1:2069072..2070142(-)	partial			WP_011389531.1	SPOR domain-containing protein	40.4	40.4	88.9
MGA_1872	LOCUS_18620	sequence1:2090875..2091123(-)	frameshift		2091194,2091172,2091191	WP_011389550.1	DUF2497 domain-containing protein	100.0	39.4	96.3
MGA_1873	LOCUS_18630	sequence1:2091108..2091530(-)	frameshift		2091194,2091172	WP_011389550.1	DUF2497 domain-containing protein	59.3	39.9	61.4
MGA_2032	LOCUS_20220	sequence1:2263131..2263340(+)	partial			WP_011389706.1	DUF1656 domain-containing protein	71.0	71.0	100.0
MGA_2190	LOCUS_21800	sequence1:2449110..2449352(-)	partial			WP_042440419.1	ATP-dependent Clp protease adapter ClpS	100.0	66.1	100.0
MGA_2213	LOCUS_22030	sequence1:2474731..2475519(-)	partial			WP_014626336.1	hypothetical protein	34.4	32.2	42.4
MGA_2214	LOCUS_22040	sequence1:2475550..2475762(-)	partial			WP_147041310.1	IS256 family transposase	81.4	22.9	75.4
MGA_2274	LOCUS_22640	sequence1:2543421..2543591(-)	frameshift,internal_stop_codon	2543743..2543745(-),2543421..2543423(-)	2543348,2543574	WP_066842340.1	IS256 family transposase	89.3	12.5	86.3
MGA_2275	LOCUS_22650	sequence1:2543743..2544021(-)	internal_stop_codon	2543743..2543745(-)		WP_171910601.1	transposase	100.0	73.0	82.6
MGA_2366	LOCUS_23560	sequence1:2639369..2639557(-)	partial			WP_042440139.1	ATP-binding protein	100.0	20.9	98.4
MGA_2412	LOCUS_24020	sequence1:2695627..2696271(+)	partial			WP_042440146.1	protein-glutamate O-methyltransferase CheR	100.0	74.0	100.0
MGA_2443	LOCUS_24320	sequence1:2741697..2742152(-)	partial			WP_011390108.1	DUF4169 family protein	42.4	79.0	78.1
MGA_2623	LOCUS_26110	sequence1:2945404..2945592(-)	partial			WP_011390284.1	hypothetical protein	100.0	65.3	98.4
MGA_2656	LOCUS_26440	sequence1:2984574..2984765(+)	internal_stop_codon	2984763..2984765(+),2984358..2984360(+),2984835..2984837(+),2984547..2984549(+)		WP_024078840.1	IS256 family transposase	100.0	15.7	73.0
MGA_2657	LOCUS_26450	sequence1:2984880..2985107(+)	internal_stop_codon	2984763..2984765(+),2984835..2984837(+)		WP_024078840.1	IS256 family transposase	100.0	18.7	85.3
MGA_2688	LOCUS_26760	sequence1:3013169..3014101(-)	partial			WP_011390343.1	diguanylate cyclase	100.0	54.5	99.7
MGA_2704	LOCUS_26920	sequence1:3034269..3034658(+)	frameshift		3034625	WP_188583328.1	IS5 family transposase	92.2	33.1	80.2
MGA_2706	LOCUS_26940	sequence1:3039143..3039358(+)	partial			WP_188583328.1	IS5 family transposase	84.5	16.7	64.5
MGA_2710	LOCUS_26980	sequence1:3042940..3043494(-)	partial			WP_011390364.1	XRE family transcriptional regulator	100.0	74.2	97.8
MGA_2735	LOCUS_27230	sequence1:3067939..3068508(+)	partial			WP_011390388.1	hypothetical protein	100.0	67.0	100.0
MGA_2737	LOCUS_27250	sequence1:3069620..3069979(-)	partial			WP_011390390.1	hypothetical protein	100.0	32.2	100.0
MGA_2803	LOCUS_27900	sequence1:3127502..3128179(+)	frameshift		3128169	WP_193384991.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	100.0	67.8	94.7
MGA_2854	LOCUS_28410	sequence1:3187430..3187798(-)	partial			WP_137313061.1	PAS domain S-box protein	72.1	13.4	64.8
MGA_2860	LOCUS_28470	sequence1:3193371..3193913(-)	partial			WP_011390571.1	acyltransferase	100.0	46.8	99.4
MGA_2951	LOCUS_29380	sequence1:3280782..3281381(+)	partial			WP_011390478.1	flagellar protein FlgN	100.0	74.3	100.0
MGA_2990	LOCUS_29770	sequence1:3333166..3333486(+)	partial			WP_052306704.1	hypothetical protein	100.0	46.1	99.1
MGA_3008	LOCUS_29950	sequence1:3348313..3348720(-)	partial			WP_147041310.1	IS256 family transposase	97.8	53.0	83.3
MGA_3022	LOCUS_30090	sequence1:3360568..3360780(+)	partial			WP_042440478.1	DUF2321 domain-containing protein	100.0	43.8	100.0
MGA_3061	LOCUS_30480	sequence1:3408349..3408795(+)	partial			WP_011390709.1	hypothetical protein	61.5	34.3	74.7
MGA_3091	LOCUS_30780	sequence1:3440124..3441014(+)	frameshift		3439866	WP_011390735.1	tricarballylate utilization 4Fe-4S protein TcuB	100.0	76.1	85.8
MGA_3099	LOCUS_30860	sequence1:3448160..3448444(-)	partial			WP_011390743.1	hypothetical protein	100.0	68.6	100.0
MGA_3261	LOCUS_32480	sequence1:3638966..3639511(-)	frameshift		3639552	WP_011390901.1	putative virulence factor	100.0	20.1	96.7
MGA_3262	LOCUS_32490	sequence1:3639511..3641670(-)	frameshift		3639549	WP_011390901.1	putative virulence factor	96.9	77.4	96.0
MGA_3282	LOCUS_32690	sequence1:3664833..3665126(-)	frameshift		3665218	WP_014626529.1	TetR/AcrR family transcriptional regulator	100.0	47.8	92.8
MGA_3320	LOCUS_33070	sequence1:3701785..3702165(-)	partial			WP_011390959.1	hemerythrin family protein	87.3	62.5	100.0
MGA_3421	LOCUS_34070	sequence1:3813418..3814134(+)	internal_stop_codon	3813277..3813279(+)		WP_076611897.1	IS1595-like element ISRsp21 family transposase	100.0	77.3	70.2
MGA_3459	LOCUS_34450	sequence1:3856081..3856326(-)	partial			WP_011391091.1	helix-turn-helix transcriptional regulator	85.2	55.2	98.6
MGA_3680	LOCUS_36660	sequence1:4105642..4106853(-)	partial			WP_011391310.1	methyl-accepting chemotaxis protein	100.0	71.6	98.3
MGA_3696	LOCUS_36820	sequence1:4122494..4122718(-)	partial			WP_011391325.1	DUF1674 domain-containing protein	62.2	70.8	97.8
MGA_3896	LOCUS_38820	sequence1:4326843..4327409(+)	partial			WP_011391525.1	ribosome maturation factor RimP	80.3	67.1	100.0
MGA_3924	LOCUS_39100	sequence2:2118..2519(+)	frameshift		2495	WP_074921927.1	recombinase family protein	99.2	64.7	86.4
MGA_3925	LOCUS_39110	sequence2:2584..2757(+)	frameshift,internal_stop_codon	2517..2519(+)	2528	WP_095997467.1	recombinase family protein	98.2	26.9	80.4
MGA_3932	LOCUS_39180	sequence2:8534..8785(+)	internal_stop_codon	8783..8785(+)		WP_024078840.1	IS256 family transposase	98.8	20.4	92.7
MGA_3933	LOCUS_39190	sequence2:8813..9739(+)	internal_stop_codon	8783..8785(+)		WP_024078840.1	IS256 family transposase	100.0	76.8	89.0
MGA_3934	LOCUS_39200	sequence2:9740..9976(-)	partial			WP_088057164.1	recombinase family protein	73.1	31.1	78.9
MGA_3936	LOCUS_39220	sequence2:10487..10786(+)	frameshift		10747	WP_141056643.1	DUF86 domain-containing protein	87.9	68.8	81.8
MGA_3940	LOCUS_39260	sequence2:12178..13104(-)	internal_stop_codon	13132..13134(-)		WP_024078840.1	IS256 family transposase	100.0	76.8	89.0
MGA_3941	LOCUS_39270	sequence2:13132..13383(-)	internal_stop_codon	13132..13134(-)		WP_024078840.1	IS256 family transposase	98.8	20.4	92.7
MGA_3945	LOCUS_39310	sequence2:16472..17713(+)	partial			WP_184046094.1	rhamnan synthesis F family protein	96.1	33.1	50.2
MGA_3954	LOCUS_39400	sequence2:25471..26076(+)	partial			WP_011387760.1	dTDP-4-dehydrorhamnose reductase	100.0	64.8	98.5
MGA_3980	LOCUS_39660	sequence2:51412..51669(-)	partial			WP_184046096.1	ABC transporter permease	100.0	31.0	71.8
