{ "type": "genome", "identifier": "GCF_019139795.1", "organism": "Pseudomonas azerbaijanorientalis", "title": "Pseudomonas azerbaijanorientalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KU Leuven", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019139795.1", "bioproject": "PRJNA224116", "biosample": "SAMN19473666", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2842350", "species_taxid": "2842350", "organism_name": "Pseudomonas azerbaijanorientalis", "infraspecific_name": "strain=SWRI123", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/06", "asm_name": "ASM1913979v1", "asm_submitter": "KU Leuven", "gbrs_paired_asm": "GCA_019139795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/139/795/GCF_019139795.1_ASM1913979v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6228218", "genome_size_ungapped": "6228218", "gc_percent": "60.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019139795.1-RS_2024_07_22", "annotation_date": "2024-07-22", "total_gene_count": "5663", "protein_coding_gene_count": "5458", "non_coding_gene_count": "96", "pubmed_id": "34442845" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-06", "dateModified": "2021-07-06", "datePublished": "2021-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas azerbaijanorientalis" ], "sample_taxid": [ "2842350" ], "sample_host_organism": [ "Wheat" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: East Azerbaijan" ], "sample_host_location_id": [], "data_size": "1.738 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6228218", "Number of Sequences": "1", "Longest Sequences (bp)": "6228218", "N50 (bp)": "6228218", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.1", "Number of CDSs": "5517", "Average Protein Length": "327.8", "Coding Ratio (%)": "87.1", "Number of rRNAs": "22", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas azerbaijanoriens", "strain": "strain=SWRI123", "accession": "GCA_019139795.1", "taxid": 2842350, "species_taxid": 2842350, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2075, "total_fragments": 2076, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudomonas laurylsulfatiphila", "strain": "strain=AP3_16", "accession": "GCA_002934665.1", "taxid": 2011015, "species_taxid": 2011015, "relation_to_type": "type", "validated": true, "ani": 95.7803, "matched_fragments": 1822, "total_fragments": 2076, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudomonas jessenii", "strain": "strain=DSM 17150", "accession": "GCA_002236115.1", "taxid": 77298, "species_taxid": 77298, "relation_to_type": "suspected-type", "validated": true, "ani": 92.4407, "matched_fragments": 1745, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfativorans", "strain": "strain=AP3_22", "accession": "GCA_002906155.1", "taxid": 1943631, "species_taxid": 1943631, "relation_to_type": "type", "validated": true, "ani": 92.2425, "matched_fragments": 1743, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas vancouverensis", "strain": "strain=Dha-51", "accession": "GCA_004348895.1", "taxid": 95300, "species_taxid": 95300, "relation_to_type": "type", "validated": true, "ani": 87.7746, "matched_fragments": 1544, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas vancouverensis", "strain": "strain=CCUG 49675", "accession": "GCA_008801375.1", "taxid": 95300, "species_taxid": 95300, "relation_to_type": "type", "validated": true, "ani": 87.7574, "matched_fragments": 1550, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoccidens", "strain": "strain=SWRI74", "accession": "GCA_019145495.1", "taxid": 2842347, "species_taxid": 2842347, "relation_to_type": "type", "validated": true, "ani": 87.6801, "matched_fragments": 1545, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas izuensis", "strain": "strain=IzPS43_3003", "accession": "GCA_009861505.1", "taxid": 2684212, "species_taxid": 2684212, "relation_to_type": "type", "validated": true, "ani": 87.6729, "matched_fragments": 1520, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=CCUG 53116", "accession": "GCA_008801455.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 87.4209, "matched_fragments": 1479, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=MT1", "accession": "GCA_001945365.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 87.4093, "matched_fragments": 1480, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas moorei", "strain": "strain=CCUG 53114", "accession": "GCA_008801475.1", "taxid": 395599, "species_taxid": 395599, "relation_to_type": "type", "validated": true, "ani": 87.3238, "matched_fragments": 1537, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 86.4113, "matched_fragments": 1409, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 86.2037, "matched_fragments": 1397, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": 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"mean_intra_species_ani": "96.04", "min_intra_species_ani": "95.74", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": "GCF_000282455.1", "gtdb_species": "s__Pseudomonas_E sp000282455", "ani": 92.8023, "matched_fragments": 1627, "total_fragments": 2076, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000967965.1", "gtdb_species": "s__Pseudomonas_E fluorescens_O", "ani": 92.5044, "matched_fragments": 1673, "total_fragments": 2076, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, 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"sporulation": 0.013, "motility": 0.975, "range_salinity": 0.666, "facultative_respiration": 0.021, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.978, "mesophilic_range_tmp": 0.926, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.073, "bacillus_cell_shape": 0.988, "coccus_cell_shape": 0.011, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudomonas", "azerbaijanorientalis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }