{ "type": "genome", "identifier": "GCF_019139895.1", "organism": "Pseudomonas fakonensis", "title": "Pseudomonas fakonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KU Leuven", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019139895.1", "bioproject": "PRJNA224116", "biosample": "SAMN19473671", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2842355", "species_taxid": "2842355", "organism_name": "Pseudomonas fakonensis", "infraspecific_name": "strain=COW40", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/06", "asm_name": "ASM1913989v1", "asm_submitter": "KU Leuven", "gbrs_paired_asm": "GCA_019139895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/139/895/GCF_019139895.1_ASM1913989v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6147080", "genome_size_ungapped": "6147080", "gc_percent": "64.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019139895.1-RS_2024_07_22", "annotation_date": "2024-07-22", "total_gene_count": "5440", "protein_coding_gene_count": "5289", "non_coding_gene_count": "99", "pubmed_id": "34442845" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-06", "dateModified": "2021-07-06", "datePublished": "2021-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas fakonensis" ], "sample_taxid": [ "2842355" ], "sample_host_organism": [ "Xanthosoma sagittifolium" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Cameroon: Ekona" ], "sample_host_location_id": [], "data_size": "1.681 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6147080", "Number of Sequences": "1", "Longest Sequences (bp)": "6147080", "N50 (bp)": "6147080", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "5382", "Average Protein Length": "334.1", "Coding Ratio (%)": "87.8", "Number of rRNAs": "19", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas fakonensis", "strain": "strain=COW40", "accession": "GCA_019139895.1", "taxid": 2842355, "species_taxid": 2842355, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2047, "total_fragments": 2049, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudomonas xanthosomae", "strain": "strain=COR54", "accession": "GCA_019139835.1", "taxid": 2842356, "species_taxid": 2842356, "relation_to_type": "type", "validated": true, "ani": 95.4978, "matched_fragments": 1722, "total_fragments": 2049, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudomonas sichuanensis", "strain": "strain=WCHPs060039", "accession": "GCA_003231305.1", "taxid": 2213015, "species_taxid": 2213015, "relation_to_type": "type", "validated": true, "ani": 88.7497, "matched_fragments": 1429, "total_fragments": 2049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas muyukensis", "strain": "strain=COW39", "accession": "GCA_019139535.1", "taxid": 2842357, "species_taxid": 2842357, "relation_to_type": "type", "validated": true, "ani": 88.6055, "matched_fragments": 1449, "total_fragments": 2049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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