{ "type": "genome", "identifier": "GCF_019145205.1", "organism": "Pseudomonas khavaziana", "title": "Pseudomonas khavaziana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KU Leuven", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019145205.1", "bioproject": "PRJNA224116", "biosample": "SAMN19473667", "wgs_master": "JAHSTT000000000.1", "refseq_category": "na", "taxid": "2842351", "species_taxid": "2842351", "organism_name": "Pseudomonas khavaziana", "infraspecific_name": "strain=SWRI124", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/06", "asm_name": "ASM1914520v1", "asm_submitter": "KU Leuven", "gbrs_paired_asm": "GCA_019145205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/145/205/GCF_019145205.1_ASM1914520v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6479865", "genome_size_ungapped": "6479865", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "86", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019145205.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "5992", "protein_coding_gene_count": "5718", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-06", "dateModified": "2021-07-06", "datePublished": "2021-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas khavaziana" ], "sample_taxid": [ "2842351" ], "sample_host_organism": [ "Wheat" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: East Azerbaijan" ], "sample_host_location_id": [], "data_size": "1.822 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6479865", "Number of Sequences": "86", "Longest Sequences (bp)": "977713", "N50 (bp)": "520517", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "5898", "Average Protein Length": "320.4", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas synxantha", "strain": "strain=DSM 18928", "accession": "GCA_001439725.1", "taxid": 47883, "species_taxid": 47883, "relation_to_type": "type", "validated": true, "ani": 95.4839, "matched_fragments": 1820, "total_fragments": 2132, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas synxantha", "strain": "strain=LMG 2190", "accession": "GCA_900105675.1", "taxid": 47883, "species_taxid": 47883, "relation_to_type": "type", "validated": true, "ani": 95.4619, "matched_fragments": 1838, "total_fragments": 2132, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas synxantha", "strain": "strain=NBRC 3913", "accession": "GCA_002091795.1", "taxid": 47883, "species_taxid": 47883, "relation_to_type": "type", "validated": true, "ani": 95.4488, "matched_fragments": 1814, "total_fragments": 2132, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas synxantha", "strain": "strain=NCTC10696", "accession": "GCA_901482615.1", "taxid": 47883, "species_taxid": 47883, "relation_to_type": "type", "validated": true, "ani": 95.4286, "matched_fragments": 1837, "total_fragments": 2132, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas libanensis", "strain": "strain=DSM 17149", "accession": "GCA_001439685.1", "taxid": 75588, "species_taxid": 75588, "relation_to_type": "type", "validated": true, "ani": 94.8155, "matched_fragments": 1748, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas paralactis", "strain": "strain=DSM 29164", "accession": "GCA_001439735.1", "taxid": 1615673, "species_taxid": 1615673, "relation_to_type": "type", "validated": true, "ani": 89.8816, "matched_fragments": 1657, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas salmasensis", "strain": "strain=SWRI126", "accession": "GCA_014268375.2", "taxid": 2745514, "species_taxid": 2745514, "relation_to_type": "type", "validated": true, "ani": 89.8613, "matched_fragments": 1688, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas paracarnis", "strain": "strain=V5/DAB/2/5", "accession": "GCA_904063055.1", "taxid": 2750625, "species_taxid": 2750625, "relation_to_type": "type", "validated": true, "ani": 89.7534, "matched_fragments": 1640, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lactis", "strain": "strain=DSM 29167", "accession": "GCA_001439845.1", "taxid": 1615674, "species_taxid": 1615674, "relation_to_type": "type", "validated": true, "ani": 89.6954, "matched_fragments": 1696, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 87.9703, "matched_fragments": 1553, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 87.6414, "matched_fragments": 1593, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas salomonii", "strain": "strain=LMG 22120", "accession": "GCA_001730645.1", "taxid": 191391, "species_taxid": 191391, "relation_to_type": "type", "validated": true, "ani": 87.5908, "matched_fragments": 1573, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas salomonii", "strain": "strain=ICMP 14252", "accession": "GCA_900107155.1", "taxid": 191391, "species_taxid": 191391, "relation_to_type": "type", "validated": true, "ani": 87.5748, "matched_fragments": 1588, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas canadensis", "strain": "strain=2-92", "accession": "GCA_000503215.1", "taxid": 915099, "species_taxid": 915099, "relation_to_type": "type", "validated": true, "ani": 87.5154, "matched_fragments": 1562, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas edaphica", "strain": "strain=RD25", "accession": "GCA_005863185.1", "taxid": 2006980, "species_taxid": 2006980, "relation_to_type": "type", "validated": true, "ani": 87.4591, "matched_fragments": 1216, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 87.373, "matched_fragments": 1572, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_001730615.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 87.3231, "matched_fragments": 1581, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 85.5175, "matched_fragments": 1442, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas karstica", "strain": "strain=CCM 7891", "accession": "GCA_009707515.1", "taxid": 1055468, "species_taxid": 1055468, "relation_to_type": "type", "validated": true, "ani": 84.9587, "matched_fragments": 1306, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ekonensis", "strain": "strain=COR58", "accession": "GCA_019145435.1", "taxid": 2842353, "species_taxid": 2842353, "relation_to_type": "type", "validated": true, "ani": 83.2841, "matched_fragments": 1247, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=NBRC 103043", "accession": "GCA_002091555.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 79.6267, "matched_fragments": 864, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=LMG 18378", "accession": "GCA_900112375.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 79.5772, "matched_fragments": 881, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=DSM 50332", "accession": "GCA_004745455.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 79.553, "matched_fragments": 892, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangmingensis", "strain": "strain=DSM 24213", "accession": "GCA_900114825.1", "taxid": 1720063, "species_taxid": 1720063, "relation_to_type": "type", "validated": true, "ani": 77.3607, "matched_fragments": 228, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 75.7271, "matched_fragments": 62, "total_fragments": 2132, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003851495.1", "gtdb_species": "s__Pseudomonas_E fluorescens_BB", "ani": 97.6476, "matched_fragments": 1891, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.3929, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_900105675.1", "gtdb_species": "s__Pseudomonas_E synxantha", "ani": 95.4424, "matched_fragments": 1840, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.7053, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_001439685.1", "gtdb_species": "s__Pseudomonas_E libanensis", "ani": 94.8297, "matched_fragments": 1746, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.7053, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "95.87", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009659625.1", "gtdb_species": "s__Pseudomonas_E haemolytica", "ani": 91.0149, "matched_fragments": 1684, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000263715.2", "gtdb_species": "s__Pseudomonas_E synxantha_A", "ani": 90.2654, "matched_fragments": 1730, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.66", "min_intra_species_ani": "97.33", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001439735.1", "gtdb_species": "s__Pseudomonas_E paralactis", "ani": 89.8813, "matched_fragments": 1657, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001902145.1", "gtdb_species": "s__Pseudomonas_E fluorescens_BV", "ani": 89.8471, "matched_fragments": 1649, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.76", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_904063055.1", "gtdb_species": "s__Pseudomonas_E paracarnis", "ani": 89.755, "matched_fragments": 1640, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.75", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.84", "num_clustered_genomes": 86, "status": "-" }, { "accession": "GCF_001439845.1", "gtdb_species": "s__Pseudomonas_E lactis", "ani": 89.7028, "matched_fragments": 1695, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.24", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 30, "status": "-" }, { "accession": "GCF_014207255.1", "gtdb_species": "s__Pseudomonas_E sp014207255", "ani": 88.0392, "matched_fragments": 1546, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003097075.1", "gtdb_species": "s__Pseudomonas_E sp003097075", "ani": 88.0021, "matched_fragments": 1518, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900105325.1", "gtdb_species": "s__Pseudomonas_E marginalis", "ani": 87.9217, "matched_fragments": 1589, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.53", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_000612585.1", "gtdb_species": "s__Pseudomonas_E sp000612585", "ani": 87.8385, "matched_fragments": 1513, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013385965.1", "gtdb_species": "s__Pseudomonas_E edaphica", "ani": 87.6182, "matched_fragments": 1582, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.93", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_900107155.1", "gtdb_species": "s__Pseudomonas_E salomonii", "ani": 87.567, "matched_fragments": 1590, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "96.43", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_015163715.1", "gtdb_species": "s__Pseudomonas_E cyclaminis", "ani": 87.4658, "matched_fragments": 1390, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.88", "min_intra_species_ani": "95.83", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.80", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_001186335.1", "gtdb_species": "s__Pseudomonas_E trivialis_B", "ani": 87.4423, "matched_fragments": 1556, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.34", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_002563895.1", "gtdb_species": "s__Pseudomonas_E lurida", "ani": 87.3624, "matched_fragments": 1573, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.19", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_019139815.1", "gtdb_species": "s__Pseudomonas_E sp900005815", "ani": 87.2502, "matched_fragments": 1488, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001983175.1", "gtdb_species": "s__Pseudomonas_E cedrina", "ani": 87.2332, "matched_fragments": 1508, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.10", "min_intra_species_ani": "97.30", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001439805.1", "gtdb_species": "s__Pseudomonas_E trivialis", "ani": 86.9226, "matched_fragments": 1415, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "95.41", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004519405.1", "gtdb_species": "s__Pseudomonas_E sp004519405", "ani": 86.7847, "matched_fragments": 1549, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.60", "min_intra_species_ani": "98.40", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_009707515.1", "gtdb_species": "s__Pseudomonas_E sp009707515", "ani": 84.946, "matched_fragments": 1308, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002018875.1", "gtdb_species": "s__Pseudomonas_E sp002018875", "ani": 83.502, "matched_fragments": 1316, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.08", "min_intra_species_ani": "96.52", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_902497875.1", "gtdb_species": "s__Pseudomonas_E fluorescens_BR", "ani": 82.7525, "matched_fragments": 1133, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114825.1", "gtdb_species": "s__Pseudomonas_D yangmingensis", "ani": 77.3728, "matched_fragments": 227, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016716465.1", "gtdb_species": "s__JADJWH01 sp016716465", "ani": 75.503, "matched_fragments": 68, "total_fragments": 2132, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__JADJWH01;f__JADJWH01;g__JADJWH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.248, "cell_length": 0.186, "doubling_h": -0.025, "growth_tmp": 28.767, "optimum_tmp": 27.972, "optimum_ph": 7.258, "genome_size": 5663774.24, "gc_content": 60.938, "coding_genes": 5204.79, "rRNA16S_genes": 5.319, "tRNA_genes": 67.35, "gram_stain": 0.0, "sporulation": 0.013, "motility": 0.975, "range_salinity": 0.666, "facultative_respiration": 0.021, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.978, "mesophilic_range_tmp": 0.926, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.073, "bacillus_cell_shape": 0.988, "coccus_cell_shape": 0.011, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudomonas", "khavaziana" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }