{ "type": "genome", "identifier": "GCF_019145495.1", "organism": "Pseudomonas azerbaijanoccidentalis", "title": "Pseudomonas azerbaijanoccidentalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KU Leuven", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019145495.1", "bioproject": "PRJNA224116", "biosample": "SAMN19473663", "wgs_master": "JAHSTU000000000.1", "refseq_category": "reference genome", "taxid": "2842347", "species_taxid": "2842347", "organism_name": "Pseudomonas azerbaijanoccidentalis", "infraspecific_name": "strain=SWRI74", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/06", "asm_name": "ASM1914549v1", "asm_submitter": "KU Leuven", "gbrs_paired_asm": "GCA_019145495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/145/495/GCF_019145495.1_ASM1914549v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6748268", "genome_size_ungapped": "6748268", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019145495.1-RS_2024_07_22", "annotation_date": "2024-07-22", "total_gene_count": "6219", "protein_coding_gene_count": "6082", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-06", "dateModified": "2021-07-06", "datePublished": "2021-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas azerbaijanoccidentalis" ], "sample_taxid": [ "2842347" ], "sample_host_organism": [ "Wheat" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Salmas" ], "sample_host_location_id": [], "data_size": "1.893 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6748268", "Number of Sequences": "29", "Longest Sequences (bp)": "1487456", "N50 (bp)": "743063", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "6193", "Average Protein Length": "322.6", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas azerbaijanoccidens", "strain": "strain=SWRI74", "accession": "GCA_019145495.1", "taxid": 2842347, "species_taxid": 2842347, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"status": "below_threshold" }, { "organism_name": "Pseudomonas izuensis", "strain": "strain=IzPS43_3003", "accession": "GCA_009861505.1", "taxid": 2684212, "species_taxid": 2684212, "relation_to_type": "type", "validated": true, "ani": 87.7303, "matched_fragments": 1603, "total_fragments": 2238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfativorans", "strain": "strain=AP3_22", "accession": "GCA_002906155.1", "taxid": 1943631, "species_taxid": 1943631, "relation_to_type": "type", "validated": true, "ani": 87.7166, "matched_fragments": 1560, "total_fragments": 2238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoriens", "strain": "strain=SWRI123", "accession": "GCA_019139795.1", "taxid": 2842350, "species_taxid": 2842350, "relation_to_type": "type", "validated": true, "ani": 87.6239, "matched_fragments": 1557, "total_fragments": 2238, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=CCUG 51522", "accession": "GCA_008801525.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 86.6196, "matched_fragments": 1446, "total_fragments": 2238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas farris", "strain": "strain=SWRI79", "accession": "GCA_019145235.1", "taxid": 2841207, "species_taxid": 2841207, "relation_to_type": "type", "validated": true, "ani": 86.5713, "matched_fragments": 1418, "total_fragments": 2238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 86.068, "matched_fragments": 1407, "total_fragments": 2238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 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