{ "tc_result": [ { "organism_name": "Candidimonas humi", "strain": "strain=DSM 25336", "accession": "GCA_019166065.1", "taxid": 683355, "species_taxid": 683355, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1554, "total_fragments": 1556, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Candidimonas nitroreducens", "strain": "strain=SC-089", "accession": "GCA_002209565.1", "taxid": 683354, "species_taxid": 683354, "relation_to_type": "type", "validated": true, "ani": 87.5868, "matched_fragments": 1122, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parapusillimonas granuli", "strain": "strain=DSM 18079", "accession": "GCA_014202705.1", "taxid": 380911, "species_taxid": 380911, "relation_to_type": "type", "validated": true, "ani": 79.8176, "matched_fragments": 526, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 79.7624, "matched_fragments": 617, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parapusillimonas granuli", "strain": "strain=LMG 24012", "accession": "GCA_013416525.1", "taxid": 380911, "species_taxid": 380911, "relation_to_type": "type", "validated": true, "ani": 79.7467, "matched_fragments": 524, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pusillimonas caeni", "strain": "strain=KCTC 42353", "accession": "GCA_003545815.1", "taxid": 1348472, "species_taxid": 1348472, "relation_to_type": "type", "validated": true, "ani": 79.6676, "matched_fragments": 463, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5663, "matched_fragments": 515, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter veterisilvae", "strain": "strain=LMG 30378", "accession": "GCA_900496975.1", "taxid": 2069367, "species_taxid": 2069367, "relation_to_type": "type", "validated": true, "ani": 79.3993, "matched_fragments": 560, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=LMG 1231", "accession": "GCA_902859715.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 79.2367, "matched_fragments": 566, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=NBRC 15125", "accession": "GCA_001571365.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 79.2157, "matched_fragments": 579, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella hinzii", "strain": "strain=NCTC13199", "accession": "GCA_900637615.1", "taxid": 103855, "species_taxid": 103855, "relation_to_type": "type", "validated": true, "ani": 79.0427, "matched_fragments": 527, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 78.9686, "matched_fragments": 517, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eoetvoesia caeni", "strain": "strain=PB3-7B", "accession": "GCA_022688825.1", "taxid": 645616, "species_taxid": 645616, "relation_to_type": "type", "validated": true, "ani": 78.3917, "matched_fragments": 400, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella avium", "strain": "strain=NCTC12033", "accession": "GCA_900445835.1", "taxid": 521, "species_taxid": 521, "relation_to_type": "type", "validated": true, "ani": 78.1331, "matched_fragments": 291, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella avium", "strain": "strain=HAMBI_2160", "accession": "GCA_003350095.1", "taxid": 521, "species_taxid": 521, "relation_to_type": "type", "validated": true, "ani": 78.1084, "matched_fragments": 292, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella avium", "strain": "strain=ATCC 35086", "accession": "GCA_003581385.1", "taxid": 521, "species_taxid": 521, "relation_to_type": "type", "validated": true, "ani": 78.071, "matched_fragments": 296, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pusillimonas minor", "strain": "strain=YC-7-48", "accession": "GCA_014237865.1", "taxid": 2697024, "species_taxid": 2697024, "relation_to_type": "type", "validated": true, "ani": 77.9715, "matched_fragments": 213, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus denitrificans", "strain": "strain=DSM 12475", "accession": "GCA_000376425.1", "taxid": 36861, "species_taxid": 36861, "relation_to_type": "type", "validated": true, "ani": 76.6778, "matched_fragments": 139, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella solisilvae", "strain": "strain=DHG54", "accession": "GCA_003351225.1", "taxid": 1920168, "species_taxid": 1920168, "relation_to_type": "type", "validated": true, "ani": 76.0517, "matched_fragments": 131, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria flava", "strain": "strain=MAH-13", "accession": "GCA_017837635.1", "taxid": 2821489, "species_taxid": 2821489, "relation_to_type": "type", "validated": true, "ani": 75.6774, "matched_fragments": 152, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax mobilis", "strain": "strain=MT13131", "accession": "GCA_002864685.1", "taxid": 2019569, "species_taxid": 2019569, "relation_to_type": "type", "validated": true, "ani": 75.4074, "matched_fragments": 87, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_019166065.1", "gtdb_species": "s__Candidimonas humi", "ani": 100.0, "matched_fragments": 1554, "total_fragments": 1556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002209565.1", "gtdb_species": "s__Candidimonas nitroreducens", "ani": 87.5865, "matched_fragments": 1122, "total_fragments": 1556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014203015.1", "gtdb_species": "s__Castellaniella defragrans", "ani": 79.9067, "matched_fragments": 496, "total_fragments": 1556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Castellaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_013416525.1", "gtdb_species": "s__Parapusillimonas granuli", "ani": 79.7662, "matched_fragments": 522, "total_fragments": 1556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Parapusillimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001270295.1", "gtdb_species": "s__Achromobacter sp001270295", "ani": 79.7533, "matched_fragments": 459, "total_fragments": 1556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017745595.1", "gtdb_species": "s__Bordetella_A petrii_C", "ani": 79.7495, "matched_fragments": 545, "total_fragments": 1556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002261345.1", "gtdb_species": "s__Bordetella_A sp002261345", "ani": 79.7345, "matched_fragments": 598, "total_fragments": 1556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "99.26", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003545815.1", "gtdb_species": "s__Pusillimonas caeni", "ani": 79.73, "matched_fragments": 458, "total_fragments": 1556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pusillimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017356245.1", "gtdb_species": "s__Bordetella_A petrii_D", "ani": 79.591, "matched_fragments": 602, "total_fragments": 1556, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018820745.1", "gtdb_species": "s__Thiobacillus sp018820745", "ani": 75.8998, "matched_fragments": 62, "total_fragments": 1556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }