{ "type": "genome", "identifier": "GCF_019186805.1", "organism": "Comamonas fluminis", "title": "Comamonas fluminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019186805.1", "bioproject": "PRJNA224116", "biosample": "SAMN17081982", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2796366", "species_taxid": "2796366", "organism_name": "Comamonas fluminis", "infraspecific_name": "strain=CJ34", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/09", "asm_name": "ASM1918680v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_019186805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/186/805/GCF_019186805.1_ASM1918680v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4908875", "genome_size_ungapped": "4908875", "gc_percent": "59.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019186805.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4509", "protein_coding_gene_count": "4353", "non_coding_gene_count": "120", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-09", "dateModified": "2021-07-09", "datePublished": "2021-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonas fluminis" ], "sample_taxid": [ "2796366" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.359 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4908875", "Number of Sequences": "2", "Longest Sequences (bp)": "4856737", "N50 (bp)": "4856737", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.7", "Number of CDSs": "4450", "Average Protein Length": "323.9", "Coding Ratio (%)": "88.1", "Number of rRNAs": "21", "Number of tRNAs": "96", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Comamonas fluminis", "strain": "strain=CJ34", "accession": "GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1629, "total_fragments": 1635, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=ATCC 11996", "accession": "GCA_000241525.2", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 84.714, "matched_fragments": 1118, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=NCTC10698", "accession": "GCA_900461225.1", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 84.7121, "matched_fragments": 1140, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=NBRC 14951", "accession": "GCA_000740035.1", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 84.7082, "matched_fragments": 1115, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_000964545.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 84.6995, "matched_fragments": 1097, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001517325.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 84.6846, "matched_fragments": 1116, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001418295.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 84.6737, "matched_fragments": 1118, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas suwonensis", "strain": "strain=EJ-4", "accession": "GCA_012844455.2", "taxid": 2606214, "species_taxid": 2606214, "relation_to_type": "type", "validated": true, "ani": 84.3709, "matched_fragments": 1110, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas terrigena", "strain": "strain=NCTC1937", "accession": "GCA_900461435.1", "taxid": 32013, "species_taxid": 32013, "relation_to_type": "type", "validated": true, "ani": 81.6021, "matched_fragments": 760, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas aquatica", "strain": "strain=NBRC 14918", "accession": "GCA_000739875.1", "taxid": 225991, "species_taxid": 225991, "relation_to_type": "type", "validated": true, "ani": 80.9948, "matched_fragments": 647, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, 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