{ "type": "genome", "identifier": "GCF_019203965.1", "organism": "Elioraea tepida", "title": "Elioraea tepida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tokyo Metropolitan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019203965.1", "bioproject": "PRJNA224116", "biosample": "SAMN19594106", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2843330", "species_taxid": "2843330", "organism_name": "Elioraea tepida", "infraspecific_name": "strain=MS-P2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/13", "asm_name": "ASM1920396v1", "asm_submitter": "Tokyo Metropolitan University", "gbrs_paired_asm": "GCA_019203965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/203/965/GCF_019203965.1_ASM1920396v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3367643", "genome_size_ungapped": "3367643", "gc_percent": "70.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019203965.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3295", "protein_coding_gene_count": "3145", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-13", "dateModified": "2021-07-13", "datePublished": "2021-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Elioraea tepida" ], "sample_taxid": [ "2843330" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Mushroom Spring, Yellowstone National Park, Wyoming" ], "sample_host_location_id": [], "data_size": "0.901 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3367643", "Number of Sequences": "1", "Longest Sequences (bp)": "3367643", "N50 (bp)": "3367643", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "3285", "Average Protein Length": "312.6", "Coding Ratio (%)": "91.5", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Elioraea tepida", "strain": "strain=MS-P2", "accession": "GCA_019203965.1", "taxid": 2843330, "species_taxid": 2843330, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1121, "total_fragments": 1122, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Elioraea rosea", "strain": "strain=PF-30", "accession": "GCA_007644105.1", "taxid": 2492390, "species_taxid": 2492390, "relation_to_type": "type", "validated": true, "ani": 81.908, "matched_fragments": 781, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elioraea thermophila", "strain": "strain=YIM 72297", "accession": "GCA_003336755.1", "taxid": 2185104, "species_taxid": 2185104, "relation_to_type": "type", "validated": true, "ani": 79.4567, "matched_fragments": 554, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 77.9588, "matched_fragments": 479, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas cervicalis", "strain": "strain=ATCC 49957", "accession": "GCA_000164635.1", "taxid": 204525, "species_taxid": 204525, "relation_to_type": "type", "validated": true, "ani": 77.6444, "matched_fragments": 338, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisphaera rubrifaciens", "strain": "strain=HS-AP3", "accession": "GCA_000964365.1", "taxid": 50715, "species_taxid": 50715, "relation_to_type": "type", "validated": true, "ani": 77.5345, "matched_fragments": 194, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 77.4295, "matched_fragments": 346, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rhizosphaerae", "strain": "strain=YW11", "accession": "GCA_002631185.1", "taxid": 1335062, "species_taxid": 1335062, "relation_to_type": "type", "validated": true, "ani": 77.4099, "matched_fragments": 339, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 77.208, "matched_fragments": 324, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 77.136, "matched_fragments": 264, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 76.9147, "matched_fragments": 303, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas pecuniae", "strain": "strain=DSM 25622", "accession": "GCA_014199205.1", "taxid": 693023, "species_taxid": 693023, "relation_to_type": "type", "validated": true, "ani": 76.9127, "matched_fragments": 347, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 76.85, "matched_fragments": 357, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, "species_taxid": 1979269, "relation_to_type": "type", "validated": true, "ani": 76.5117, "matched_fragments": 259, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oryzae", "strain": "strain=COC8", "accession": "GCA_008364795.1", "taxid": 286727, "species_taxid": 286727, "relation_to_type": "type", "validated": true, "ani": 76.3425, "matched_fragments": 199, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum lipoferum", "strain": "strain=59b", "accession": "GCA_008364955.1", "taxid": 193, "species_taxid": 193, "relation_to_type": "type", "validated": true, "ani": 76.3241, "matched_fragments": 204, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_019203965.1", "gtdb_species": "s__Elioraea_A sp019203965", "ani": 100.0, "matched_fragments": 1122, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Elioraea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007644105.1", "gtdb_species": "s__Elioraea_A rosea", "ani": 81.9113, "matched_fragments": 781, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Elioraea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006704265.1", "gtdb_species": "s__Elioraea sp006704265", "ani": 80.6249, "matched_fragments": 630, "total_fragments": 1122, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Elioraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014644455.1", "gtdb_species": "s__Caldovatus sediminis", "ani": 78.0889, "matched_fragments": 488, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Caldovatus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000425365.1", "gtdb_species": "s__Roseococcus flocculans", "ani": 78.0416, "matched_fragments": 429, "total_fragments": 1122, "gtdb_taxonomy": 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