{ "type": "genome", "identifier": "GCF_019218265.1", "organism": "Maritimibacter dapengensis", "title": "Maritimibacter dapengensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Peking University Shenzhen Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019218265.1", "bioproject": "PRJNA224116", "biosample": "SAMN19238802", "wgs_master": "JAHUZE000000000.1", "refseq_category": "reference genome", "taxid": "2836868", "species_taxid": "2836868", "organism_name": "Maritimibacter dapengensis", "infraspecific_name": "strain=DP4N28-5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/14", "asm_name": "ASM1921826v1", "asm_submitter": "Peking University Shenzhen Institute", "gbrs_paired_asm": "GCA_019218265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/218/265/GCF_019218265.1_ASM1921826v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3959618", "genome_size_ungapped": "3959618", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-08", "total_gene_count": "3971", "protein_coding_gene_count": "3897", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-14", "dateModified": "2021-07-14", "datePublished": "2021-07-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Maritimibacter dapengensis" ], "sample_taxid": [ "2836868" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.106 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3959618", "Number of Sequences": "20", "Longest Sequences (bp)": "1236032", "N50 (bp)": "1197778", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "3932", "Average Protein Length": "304.7", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maritimibacter alexandrii", "strain": "strain=LZ-17", "accession": "GCA_005871115.1", "taxid": 2570355, "species_taxid": 2570355, "relation_to_type": "type", "validated": true, "ani": 81.4902, "matched_fragments": 786, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter alkaliphilus", "strain": "strain=HTCC2654", "accession": "GCA_000152805.1", "taxid": 404236, "species_taxid": 404236, "relation_to_type": "type", "validated": true, "ani": 81.2898, "matched_fragments": 787, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter alkaliphilus", "strain": "strain=HTCC2654", "accession": "GCA_008124775.1", "taxid": 404236, "species_taxid": 404236, "relation_to_type": "type", "validated": true, "ani": 81.2705, "matched_fragments": 784, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter harenae", "strain": "strain=DP07", "accession": "GCA_009882975.1", "taxid": 2606218, "species_taxid": 2606218, "relation_to_type": "type", "validated": true, "ani": 80.3034, "matched_fragments": 685, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=CGMCC 1.12377", "accession": "GCA_014637265.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 78.9553, "matched_fragments": 402, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_000819565.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 78.8246, "matched_fragments": 360, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribius salinus", "strain": "strain=DSM 26892", "accession": "GCA_900141995.1", "taxid": 313368, "species_taxid": 313368, "relation_to_type": "type", "validated": true, "ani": 78.0783, "matched_fragments": 309, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.8051, "matched_fragments": 306, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum dunhuangense", "strain": "strain=YYQ-30", "accession": "GCA_013093415.1", "taxid": 1505036, "species_taxid": 1505036, "relation_to_type": "type", "validated": true, "ani": 77.7084, "matched_fragments": 223, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 77.6736, "matched_fragments": 302, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium atlanticum", "strain": "strain=22II-S11-z10", "accession": "GCA_000671395.1", "taxid": 1461693, "species_taxid": 1461693, "relation_to_type": "type", "validated": true, "ani": 77.6216, "matched_fragments": 185, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.5977, "matched_fragments": 300, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 77.4174, "matched_fragments": 297, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubellimicrobium roseum", "strain": "strain=YIM 48858", "accession": "GCA_006152145.1", "taxid": 687525, "species_taxid": 687525, "relation_to_type": "type", "validated": true, "ani": 77.143, "matched_fragments": 204, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_019218265.1", "gtdb_species": "s__Maritimibacter sp019218265", "ani": 100.0, "matched_fragments": 1311, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Maritimibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000152805.1", "gtdb_species": "s__Maritimibacter alkaliphilus", "ani": 81.307, "matched_fragments": 785, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Maritimibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_001626765.1", "gtdb_species": "s__Maritimibacter sp001626765", "ani": 80.8902, "matched_fragments": 592, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Maritimibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003520545.1", "gtdb_species": "s__Maritimibacter sp003520545", "ani": 80.5644, "matched_fragments": 540, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Maritimibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009882975.1", "gtdb_species": "s__Maritimibacter harenae", "ani": 80.3082, "matched_fragments": 684, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Maritimibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011389895.1", "gtdb_species": "s__Maritimibacter sp011389895", "ani": 80.2326, "matched_fragments": 637, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Maritimibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002695005.1", "gtdb_species": "s__Maritimibacter sp002695005", "ani": 80.1991, "matched_fragments": 685, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Maritimibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014640115.1", "gtdb_species": "s__Muriiphilus lacisalsi", "ani": 78.5357, "matched_fragments": 432, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Muriiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.29, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 10.0, "genome_size": 4529231.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": 1.0, "tRNA_genes": 49.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Maritimibacter", "dapengensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }