{
    "type": "genome",
    "identifier": "GCF_019222765.1",
    "organism": "Nocardia iowensis",
    "title": "Nocardia iowensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Technology, Jamaica",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019222765.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN20062579",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "204891",
        "species_taxid": "204891",
        "organism_name": "Nocardia iowensis",
        "infraspecific_name": "strain=NRRL 5646",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/15",
        "asm_name": "ASM1922276v1",
        "asm_submitter": "University of Technology, Jamaica",
        "gbrs_paired_asm": "GCA_019222765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/222/765/GCF_019222765.1_ASM1922276v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8948074",
        "genome_size_ungapped": "8948074",
        "gc_percent": "67.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019222765.1-RS_2024_05_06",
        "annotation_date": "2024-05-06",
        "total_gene_count": "8280",
        "protein_coding_gene_count": "8133",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-15",
    "dateModified": "2021-07-15",
    "datePublished": "2021-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardia iowensis"
        ],
        "sample_taxid": [
            "204891"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Iowa"
        ],
        "sample_host_location_id": [],
        "data_size": "2.453 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.31,
        "strain_heterogeneity": 40.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8948074",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "8948074",
        "N50 (bp)": "8948074",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.8",
        "Number of CDSs": "8361",
        "Average Protein Length": "314.7",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "9",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_900269665.1",
                "taxid": 2077092,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia ninae",
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                "taxid": 356145,
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                "status": "below_threshold"
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Nocardia altamirensis",
                "strain": "strain=NBRC 108246",
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                "taxid": 472158,
                "species_taxid": 472158,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia brasiliensis",
                "strain": "strain=NBRC 14402",
                "accession": "GCA_000308475.2",
                "taxid": 37326,
                "species_taxid": 37326,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 85.0692,
                "matched_fragments": 1873,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia vulneris",
                "strain": "strain=NBRC 108936",
                "accession": "GCA_001613425.1",
                "taxid": 1141657,
                "species_taxid": 1141657,
                "relation_to_type": "type",
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                "ani": 85.0663,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia vulneris",
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                "ani": 85.0306,
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            },
            {
                "organism_name": "Nocardia rhizosphaerihabitans",
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                "taxid": 1691570,
                "species_taxid": 1691570,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia salmonicida subsp. cummidelens",
                "strain": "strain=NBRC 100378",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia salmonicida",
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                "ani": 80.2358,
                "matched_fragments": 1140,
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                "ani_threshold": 95,
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            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_019222765.1",
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                "mean_intra_species_ani": "N/A",
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}