{ "type": "genome", "identifier": "GCF_019249295.1", "organism": "Alteromonas antoniana", "title": "Alteromonas antoniana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mediterranean Institute for Advanced Studies (IMEDEA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019249295.1", "bioproject": "PRJNA224116", "biosample": "SAMN17315413", "wgs_master": "JAESDH000000000.1", "refseq_category": "reference genome", "taxid": "2803813", "species_taxid": "2803813", "organism_name": "Alteromonas antoniana", "infraspecific_name": "strain=MD_567", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/14", "asm_name": "ASM1924929v1", "asm_submitter": "Mediterranean Institute for Advanced Studies (IMEDEA)", "gbrs_paired_asm": "GCA_019249295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/249/295/GCF_019249295.1_ASM1924929v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4948390", "genome_size_ungapped": "4948390", "gc_percent": "49.000000", "replicon_count": "0", "scaffold_count": "90", "contig_count": "90", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019249295.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4447", "protein_coding_gene_count": "4360", "non_coding_gene_count": "62", "pubmed_id": "34171620" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-14", "dateModified": "2021-07-14", "datePublished": "2021-07-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas antoniana" ], "sample_taxid": [ "2803813" ], "sample_host_organism": [ "Pelagia noctiluca" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Mediterranean Sea" ], "sample_host_location_id": [], "data_size": "1.422 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4948390", "Number of Sequences": "90", "Longest Sequences (bp)": "302887", "N50 (bp)": "156927", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.9", "Number of CDSs": "4375", "Average Protein Length": "326.0", "Coding Ratio (%)": "86.5", "Number of rRNAs": "1", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas antoniana", "strain": "strain=MD_567", "accession": "GCA_019249295.1", "taxid": 2803813, 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1608, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas portus", "strain": "strain=HB161718", "accession": "GCA_005117025.1", "taxid": 2565549, "species_taxid": 2565549, "relation_to_type": "type", "validated": true, "ani": 78.4348, "matched_fragments": 201, "total_fragments": 1608, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas confluentis", "strain": "strain=KCTC 42603", "accession": "GCA_001757105.1", "taxid": 1656094, "species_taxid": 1656094, "relation_to_type": "type", "validated": true, "ani": 78.3301, "matched_fragments": 215, "total_fragments": 1608, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas australica", "strain": "strain=H 17", "accession": "GCA_000730385.1", "taxid": 589873, "species_taxid": 589873, "relation_to_type": "type", "validated": true, "ani": 78.2743, "matched_fragments": 214, "total_fragments": 1608, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas aestuariivivens", "strain": "strain=KCTC 52655", "accession": "GCA_003367475.1", "taxid": 1938339, "species_taxid": 1938339, "relation_to_type": "type", "validated": true, "ani": 78.2386, "matched_fragments": 218, "total_fragments": 1608, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bowmanella pacifica", "strain": "strain=CGMCC 1.7086", "accession": "GCA_014645355.1", "taxid": 502051, "species_taxid": 502051, "relation_to_type": "type", "validated": true, "ani": 77.4139, "matched_fragments": 85, "total_fragments": 1608, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariibacter salexigens", "strain": "strain=DSM 15300", "accession": "GCA_000429145.1", "taxid": 226010, "species_taxid": 226010, "relation_to_type": "type", "validated": true, "ani": 77.3981, "matched_fragments": 102, "total_fragments": 1608, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariibacter 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