{ "type": "genome", "identifier": "GCF_019264345.1", "organism": "Marinobacter arenosus", "title": "Marinobacter arenosus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019264345.1", "bioproject": "PRJNA224116", "biosample": "SAMN20066151", "wgs_master": "JAHVAO000000000.1", "refseq_category": "reference genome", "taxid": "2856822", "species_taxid": "2856822", "organism_name": "Marinobacter arenosus", "infraspecific_name": "strain=CAU 1620", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/17", "asm_name": "ASM1926434v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_019264345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/264/345/GCF_019264345.1_ASM1926434v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4112988", "genome_size_ungapped": "4112788", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019264345.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "3772", "protein_coding_gene_count": "3710", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-17", "dateModified": "2021-07-17", "datePublished": "2021-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter arenosus" ], "sample_taxid": [ "2856822" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.162 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4112988", "Number of Sequences": "8", "Longest Sequences (bp)": "3146762", "N50 (bp)": "3146762", "Gap Ratio (%)": "0.004863", "GCcontent (%)": "59.2", "Number of CDSs": "3770", "Average Protein Length": "331.4", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1366, "total_fragments": 1367, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 81.3327, "matched_fragments": 794, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter alexandrii", "strain": "strain=LZ-8", "accession": "GCA_005871205.1", "taxid": 2570351, "species_taxid": 2570351, "relation_to_type": "type", "validated": true, "ani": 81.2999, "matched_fragments": 825, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter sediminum", "strain": "strain=R65", "accession": "GCA_016820575.1", "taxid": 256323, "species_taxid": 256323, "relation_to_type": "type", "validated": true, "ani": 81.2769, "matched_fragments": 783, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=KCTC 12185", "accession": "GCA_003363485.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 80.7616, "matched_fragments": 721, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter adhaerens", "strain": "strain=HP15", "accession": "GCA_000166295.1", "taxid": 1033846, "species_taxid": 1033846, "relation_to_type": "type", "validated": true, "ani": 80.6932, "matched_fragments": 719, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinus", "strain": "strain=Hb8", "accession": "GCA_001854125.1", "taxid": 1874317, "species_taxid": 1874317, "relation_to_type": "type", "validated": true, "ani": 80.6856, "matched_fragments": 708, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=LMG 23834", "accession": "GCA_002933295.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 80.6849, "matched_fragments": 733, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 80.6214, "matched_fragments": 686, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 80.607, "matched_fragments": 740, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lipolyticus", "strain": "strain=SM19", "accession": "GCA_000397065.2", "taxid": 209639, "species_taxid": 209639, "relation_to_type": "type", "validated": true, "ani": 79.9925, "matched_fragments": 574, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter santoriniensis", "strain": "strain=NKSG1", "accession": "GCA_000347775.1", "taxid": 523742, "species_taxid": 523742, "relation_to_type": "type", "validated": true, "ani": 79.9219, "matched_fragments": 572, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 79.9152, "matched_fragments": 569, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nitratireducens", "strain": "strain=AK21", "accession": "GCA_000708045.1", "taxid": 1137280, "species_taxid": 1137280, "relation_to_type": "type", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "arenosus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }