{ "type": "genome", "identifier": "GCF_019311235.1", "organism": "Mesonia aestuariivivens", "title": "Mesonia aestuariivivens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019311235.1", "bioproject": "PRJNA224116", "biosample": "SAMN20128925", "wgs_master": "JAHWDF000000000.1", "refseq_category": "reference genome", "taxid": "2796128", "species_taxid": "2796128", "organism_name": "Mesonia aestuariivivens", "infraspecific_name": "strain=JHPTF-M18", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/21", "asm_name": "ASM1931123v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_019311235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/311/235/GCF_019311235.1_ASM1931123v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3328752", "genome_size_ungapped": "3328752", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "73", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019311235.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3087", "protein_coding_gene_count": "2988", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-21", "dateModified": "2021-07-21", "datePublished": "2021-07-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesonia aestuariivivens" ], "sample_taxid": [ "2796128" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seocheon" ], "sample_host_location_id": [], "data_size": "0.928 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3328752", "Number of Sequences": "73", "Longest Sequences (bp)": "401621", "N50 (bp)": "192421", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.1", "Number of CDSs": "3006", "Average Protein Length": "326.2", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesonia mobilis", "strain": "strain=DSM 19841", "accession": "GCA_000423405.1", "taxid": 369791, "species_taxid": 369791, "relation_to_type": "type", "validated": true, "ani": 81.3287, "matched_fragments": 629, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia mobilis", "strain": "strain=KCTC 12708", "accession": "GCA_014651475.1", "taxid": 369791, "species_taxid": 369791, "relation_to_type": "type", "validated": true, "ani": 81.3121, "matched_fragments": 630, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia phycicola", "strain": "strain=DSM 21425", "accession": "GCA_900141885.1", "taxid": 579105, "species_taxid": 579105, "relation_to_type": "type", "validated": true, "ani": 80.3064, "matched_fragments": 566, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia oceanica", "strain": "strain=ISS653", "accession": "GCA_902499555.1", "taxid": 2687242, "species_taxid": 2687242, "relation_to_type": "type", "validated": true, "ani": 80.0403, "matched_fragments": 630, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia algae", "strain": "strain=DSM 15361", "accession": "GCA_003253545.1", "taxid": 213248, "species_taxid": 213248, "relation_to_type": "type", "validated": true, "ani": 77.92, "matched_fragments": 328, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zunongwangia atlantica", "strain": "strain=22II14-10F7", "accession": "GCA_002094855.1", "taxid": 1502297, "species_taxid": 1502297, "relation_to_type": "type", "validated": true, "ani": 77.5079, "matched_fragments": 221, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloflavibacter putidus", "strain": "strain=PLHSN227", "accession": "GCA_006546625.1", "taxid": 2576776, "species_taxid": 2576776, "relation_to_type": "type", "validated": true, "ani": 77.1147, "matched_fragments": 236, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochleicola gelatinilyticus", "strain": "strain=LPB0005", "accession": "GCA_001637325.1", "taxid": 1763537, "species_taxid": 1763537, "relation_to_type": "type", "validated": true, "ani": 77.0545, "matched_fragments": 91, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina spongiae", "strain": "strain=DSM 22623", "accession": "GCA_900141785.1", "taxid": 570521, "species_taxid": 570521, "relation_to_type": "type", "validated": true, "ani": 76.814, "matched_fragments": 96, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella helgolandensis", "strain": "strain=Z963", "accession": "GCA_013404085.1", "taxid": 2697010, "species_taxid": 2697010, "relation_to_type": "type", "validated": true, "ani": 76.5846, "matched_fragments": 115, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 76.4994, "matched_fragments": 119, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacter rhinopitheci", "strain": "strain=WQ 117", "accession": "GCA_015234135.1", "taxid": 2779678, "species_taxid": 2779678, "relation_to_type": "type", "validated": true, "ani": 76.2303, "matched_fragments": 54, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000423405.1", "gtdb_species": "s__Mesonia mobilis", "ani": 81.34, "matched_fragments": 627, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mesonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_012964435.1", "gtdb_species": "s__Mesonia sp012964435", "ani": 80.8967, "matched_fragments": 586, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mesonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900141885.1", "gtdb_species": "s__Mesonia phycicola", "ani": 80.306, "matched_fragments": 565, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mesonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008692195.1", "gtdb_species": "s__Mesonia sp008692195", "ani": 80.1219, "matched_fragments": 605, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mesonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902499555.1", "gtdb_species": "s__Mesonia oceanica", "ani": 80.0469, "matched_fragments": 630, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mesonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_003667275.1", "gtdb_species": "s__Mesonia aquimarina", "ani": 78.135, "matched_fragments": 357, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mesonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003253545.1", "gtdb_species": "s__Mesonia algae", "ani": 77.9325, "matched_fragments": 329, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mesonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.16", "min_intra_species_ani": "95.16", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900141785.1", "gtdb_species": "s__Aquimarina spongiae", "ani": 76.814, "matched_fragments": 96, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.292, "cell_length": 0.236, "doubling_h": null, "growth_tmp": 27.0, "optimum_tmp": 27.166, "optimum_ph": 7.175, "genome_size": 3193527.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.333, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mesonia", "aestuariivivens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }