{
    "type": "genome",
    "identifier": "GCF_019331715.1",
    "organism": "Bifidobacterium simiiventris",
    "title": "Bifidobacterium simiiventris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Parma",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019331715.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN19031629",
        "wgs_master": "JAHBBG000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2834434",
        "species_taxid": "2834434",
        "organism_name": "Bifidobacterium simiiventris",
        "infraspecific_name": "strain=81T8",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/23",
        "asm_name": "ASM1933171v1",
        "asm_submitter": "University of Parma",
        "gbrs_paired_asm": "GCA_019331715.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/331/715/GCF_019331715.1_ASM1933171v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2878004",
        "genome_size_ungapped": "2878004",
        "gc_percent": "63.000000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019331715.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2298",
        "protein_coding_gene_count": "2209",
        "non_coding_gene_count": "64",
        "pubmed_id": "34715437"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-23",
    "dateModified": "2021-07-23",
    "datePublished": "2021-07-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium simiiventris"
        ],
        "sample_taxid": [
            "2834434"
        ],
        "sample_host_organism": [
            "Leontopithecus rosalia"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "0.797 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2878004",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "614764",
        "N50 (bp)": "192465",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.0",
        "Number of CDSs": "2256",
        "Average Protein Length": "368.1",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 943,
                "total_fragments": 943,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Bifidobacterium aerophilum",
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                "accession": "GCA_010667685.1",
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                "species_taxid": 1798155,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 662,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium ramosum",
                "strain": "strain=DSM 100688",
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                "species_taxid": 1798158,
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                "ani": 88.4951,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium ramosum",
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                "species_taxid": 1798158,
                "relation_to_type": "type",
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                "ani": 88.4332,
                "matched_fragments": 711,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconis",
                "strain": "strain=82T10",
                "accession": "GCA_019331735.1",
                "taxid": 2834435,
                "species_taxid": 2834435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1966,
                "matched_fragments": 641,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium amazonense",
                "strain": "strain=MA1",
                "accession": "GCA_018555435.2",
                "taxid": 2809027,
                "species_taxid": 2809027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1827,
                "matched_fragments": 639,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium biavatii",
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                "accession": "GCA_000741165.1",
                "taxid": 762212,
                "species_taxid": 762212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.0269,
                "matched_fragments": 652,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium samirii",
                "strain": "strain=2033B",
                "accession": "GCA_003952945.1",
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                "species_taxid": 2306974,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
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                "accession": "GCA_019331675.1",
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                "species_taxid": 2834437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0633,
                "matched_fragments": 507,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum",
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                "accession": "GCA_022691205.1",
                "taxid": 31954,
                "species_taxid": 1694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0917,
                "matched_fragments": 299,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas avistercoris",
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                "accession": "GCA_014836445.1",
                "taxid": 2762242,
                "species_taxid": 2762242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6028,
                "matched_fragments": 116,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis saalfeldensis",
                "strain": "strain=DSM 44993",
                "accession": "GCA_900110575.1",
                "taxid": 394193,
                "species_taxid": 394193,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7938,
                "matched_fragments": 110,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_018555335.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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        ]
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    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}