{ "type": "genome", "identifier": "GCF_019334315.1", "organism": "Hymenobacter profundi", "title": "Hymenobacter profundi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019334315.1", "bioproject": "PRJNA224116", "biosample": "SAMN20255375", "wgs_master": "JAHWGL000000000.1", "refseq_category": "reference genome", "taxid": "1982110", "species_taxid": "1982110", "organism_name": "Hymenobacter profundi", "infraspecific_name": "strain=M2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/24", "asm_name": "ASM1933431v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_019334315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/334/315/GCF_019334315.1_ASM1933431v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5242266", "genome_size_ungapped": "5242266", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "222", "contig_count": "222", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019334315.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4396", "protein_coding_gene_count": "4310", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-24", "dateModified": "2021-07-24", "datePublished": "2021-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter profundi" ], "sample_taxid": [ "1982110" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.501 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5242266", "Number of Sequences": "222", "Longest Sequences (bp)": "191192", "N50 (bp)": "39734", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.7", "Number of CDSs": "4339", "Average Protein Length": "343.2", "Coding Ratio (%)": "85.2", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter profundi", "strain": "strain=M2", "accession": "GCA_019334315.1", "taxid": 1982110, "species_taxid": 1982110, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1605, "total_fragments": 1640, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter citatus", "strain": "strain=BT507", "accession": "GCA_014333615.1", "taxid": 2763506, "species_taxid": 2763506, "relation_to_type": "type", "validated": true, "ani": 88.3673, "matched_fragments": 1321, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter aerophilus", "strain": "strain=DSM 13606", "accession": "GCA_000382225.1", "taxid": 119644, "species_taxid": 119644, "relation_to_type": "type", "validated": true, "ani": 79.157, "matched_fragments": 629, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 79.1305, "matched_fragments": 702, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter perfusus", 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"GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 78.9545, "matched_fragments": 656, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacieicola", "strain": "strain=CGMCC 1.12990", "accession": "GCA_014640315.1", "taxid": 1562124, "species_taxid": 1562124, "relation_to_type": "type", "validated": true, "ani": 78.9006, "matched_fragments": 669, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter aquaticus", "strain": "strain=JCM 31653", "accession": "GCA_004765605.1", "taxid": 1867101, "species_taxid": 1867101, "relation_to_type": "type", "validated": true, "ani": 78.8672, "matched_fragments": 696, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter persicinus", "strain": "strain=1-3-3-3", "accession": "GCA_004167665.1", "taxid": 2025506, 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565, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter jejuensis", "strain": "strain=17J68-5", "accession": "GCA_006337165.1", "taxid": 2502781, "species_taxid": 2502781, "relation_to_type": "type", "validated": true, "ani": 77.82, "matched_fragments": 533, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter montanus", "strain": "strain=BT664", "accession": "GCA_014699115.1", "taxid": 2771359, "species_taxid": 2771359, "relation_to_type": "type", "validated": true, "ani": 77.618, "matched_fragments": 392, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017589435.1", "gtdb_species": "s__Hymenobacter defluvii", "ani": 96.6653, "matched_fragments": 1407, "total_fragments": 1640, "gtdb_taxonomy": 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