{ "type": "genome", "identifier": "GCF_019343195.1", "organism": "Arthrospiribacter ruber", "title": "Arthrospiribacter ruber", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gdansk", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019343195.1", "bioproject": "PRJNA224116", "biosample": "SAMN10413280", "wgs_master": "RPHB00000000.1", "refseq_category": "reference genome", "taxid": "2487934", "species_taxid": "2487934", "organism_name": "Arthrospiribacter ruber", "infraspecific_name": "strain=DPMB0001", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/26", "asm_name": "ASM1934319v1", "asm_submitter": "University of Gdansk", "gbrs_paired_asm": "GCA_019343195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/343/195/GCF_019343195.1_ASM1934319v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5360826", "genome_size_ungapped": "5360826", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019343195.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4485", "protein_coding_gene_count": "4403", "non_coding_gene_count": "58", "pubmed_id": "32094022" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-26", "dateModified": "2021-07-26", "datePublished": "2021-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrospiribacter ruber" ], "sample_taxid": [ "2487934" ], "sample_host_organism": [ "Arthrospira sp." ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Poland:Gdansk" ], "sample_host_location_id": [], "data_size": "1.508 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5360826", "Number of Sequences": "20", "Longest Sequences (bp)": "788135", "N50 (bp)": "487689", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.5", "Number of CDSs": "4350", "Average Protein Length": "353.8", "Coding Ratio (%)": "86.1", "Number of rRNAs": "7", "Number of tRNAs": "44", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Belliella baltica", "strain": "strain=DSM 15883", "accession": "GCA_000265405.1", "taxid": 232259, "species_taxid": 232259, "relation_to_type": "type", "validated": true, "ani": 78.9657, "matched_fragments": 224, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella buryatensis", "strain": "strain=5C", "accession": "GCA_900188245.1", "taxid": 1500549, "species_taxid": 1500549, "relation_to_type": "type", "validated": true, "ani": 78.167, "matched_fragments": 226, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cecembia lonarensis", "strain": "strain=LW9", "accession": "GCA_000298295.1", "taxid": 645110, "species_taxid": 645110, "relation_to_type": "type", "validated": true, "ani": 78.065, "matched_fragments": 327, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cecembia calidifontis", "strain": "strain=DSM 21411", "accession": "GCA_004216715.1", "taxid": 1187080, "species_taxid": 1187080, "relation_to_type": "type", "validated": true, "ani": 77.9769, "matched_fragments": 314, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mongoliitalea daihaiensis", "strain": "strain=X100-76", "accession": "GCA_021596945.1", "taxid": 2782006, "species_taxid": 2782006, "relation_to_type": "type", "validated": true, "ani": 77.966, "matched_fragments": 210, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella kenyensis", "strain": "strain=DSM 46651", "accession": "GCA_022549675.1", "taxid": 1472724, "species_taxid": 1472724, "relation_to_type": "type", "validated": true, "ani": 77.8378, "matched_fragments": 196, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cecembia rubra", "strain": "strain=DSM 28057", "accession": "GCA_003014575.1", "taxid": 1485585, "species_taxid": 1485585, "relation_to_type": "type", "validated": true, "ani": 77.5645, "matched_fragments": 295, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella aquatica", "strain": "strain=JCM 19468", "accession": "GCA_022549755.1", "taxid": 1323734, "species_taxid": 1323734, "relation_to_type": "type", "validated": true, "ani": 77.2353, "matched_fragments": 199, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella aquatica", "strain": "strain=CGMCC 1.12479", "accession": "GCA_014637795.1", "taxid": 1323734, "species_taxid": 1323734, "relation_to_type": "type", "validated": true, "ani": 77.2117, "matched_fragments": 197, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquiflexum lacus", "strain": "strain=CUG 91378", "accession": "GCA_015476655.1", "taxid": 2483805, "species_taxid": 2483805, "relation_to_type": "type", "validated": true, "ani": 76.9875, "matched_fragments": 297, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola marina", "strain": "strain=SCS 3-6", "accession": "GCA_020463795.1", "taxid": 2859768, 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"ani": 76.6021, "matched_fragments": 108, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus terrigena", "strain": "strain=DSM 22685", "accession": "GCA_000429445.1", "taxid": 344884, "species_taxid": 344884, "relation_to_type": "type", "validated": true, "ani": 76.4795, "matched_fragments": 78, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus yeomjeoni", "strain": "strain=DSM 23446", "accession": "GCA_003259505.1", "taxid": 291403, "species_taxid": 291403, "relation_to_type": "type", "validated": true, "ani": 76.46, "matched_fragments": 105, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus iocasae", "strain": "strain=DSM 102044", "accession": "GCA_014206875.1", "taxid": 1836499, "species_taxid": 1836499, "relation_to_type": "type", "validated": true, "ani": 76.4464, "matched_fragments": 124, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium amurskyense", "strain": "strain=KCTC 12363", "accession": "GCA_001050135.1", "taxid": 320787, "species_taxid": 320787, "relation_to_type": "type", "validated": true, "ani": 76.3531, "matched_fragments": 83, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodonellum psychrophilum", "strain": "strain=DSM 17998", "accession": "GCA_000381545.1", "taxid": 336828, "species_taxid": 336828, "relation_to_type": "type", "validated": true, "ani": 76.2654, "matched_fragments": 180, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodonellum psychrophilum", "strain": "strain=GCM71", "accession": "GCA_000473765.1", "taxid": 336828, "species_taxid": 336828, "relation_to_type": "type", "validated": true, "ani": 76.1704, "matched_fragments": 181, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium qasimii", "strain": "strain=M12-11B", "accession": "GCA_000427295.1", "taxid": 1350429, "species_taxid": 1350429, "relation_to_type": "type", "validated": true, "ani": 75.9714, "matched_fragments": 73, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium qasimii", "strain": "strain=NBRC 106168", "accession": "GCA_007991695.1", "taxid": 1350429, "species_taxid": 1350429, "relation_to_type": "type", "validated": true, "ani": 75.9497, "matched_fragments": 78, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000295935.2", "gtdb_species": "s__Indibacter alkaliphilus", "ani": 85.9133, "matched_fragments": 947, "total_fragments": 1777, "gtdb_taxonomy": 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