{
    "type": "genome",
    "identifier": "GCF_019343455.1",
    "organism": "Alcaligenes ammonioxydans",
    "title": "Alcaligenes ammonioxydans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Microbiology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019343455.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11775092",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2582914",
        "species_taxid": "2582914",
        "organism_name": "Alcaligenes ammonioxydans",
        "infraspecific_name": "strain=HO-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/26",
        "asm_name": "ASM1934345v1",
        "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_019343455.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/343/455/GCF_019343455.1_ASM1934345v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3774827",
        "genome_size_ungapped": "3774827",
        "gc_percent": "57.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019343455.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "3450",
        "protein_coding_gene_count": "3347",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-26",
    "dateModified": "2021-07-26",
    "datePublished": "2021-07-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alcaligenes ammonioxydans"
        ],
        "sample_taxid": [
            "2582914"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Beijing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.065 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3774827",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3774827",
        "N50 (bp)": "3774827",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.2",
        "Number of CDSs": "3461",
        "Average Protein Length": "321.7",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "9",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
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                "ani": 87.2689,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes faecalis subsp. faecalis",
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            },
            {
                "organism_name": "Alcaligenes faecalis",
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                "ani": 87.1796,
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                "ani_threshold": 95,
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pusillimonas faecipullorum",
                "strain": "strain=CC-YST705",
                "accession": "GCA_020539505.1",
                "taxid": 2755040,
                "species_taxid": 2755040,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eoetvoesia caeni",
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                "accession": "GCA_022688825.1",
                "taxid": 645616,
                "species_taxid": 645616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2421,
                "matched_fragments": 160,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
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                "accession": "GCA_024168865.1",
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                "validated": true,
                "ani": 77.1861,
                "matched_fragments": 184,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_001017435.1",
                "taxid": 413882,
                "species_taxid": 413882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6208,
                "matched_fragments": 64,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella benzenivorans",
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                "species_taxid": 2831643,
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                "matched_fragments": 83,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            {
                "accession": "GCF_004319585.1",
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                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
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                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "99.23",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009497775.1",
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            {
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "ammonioxydans"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}