{ "type": "genome", "identifier": "GCF_019351435.1", "organism": "Flavobacterium taihuense", "title": "Flavobacterium taihuense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Henan University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019351435.1", "bioproject": "PRJNA224116", "biosample": "SAMN20169007", "wgs_master": "JAHWYN000000000.1", "refseq_category": "reference genome", "taxid": "2857508", "species_taxid": "2857508", "organism_name": "Flavobacterium taihuense", "infraspecific_name": "strain=NAS39", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/26", "asm_name": "ASM1935143v1", "asm_submitter": "Henan University of Technology", "gbrs_paired_asm": "GCA_019351435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/351/435/GCF_019351435.1_ASM1935143v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4715363", "genome_size_ungapped": "4714923", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "73", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019351435.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4106", "protein_coding_gene_count": "4022", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-26", "dateModified": "2021-07-26", "datePublished": "2021-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium taihuense" ], "sample_taxid": [ "2857508" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Taihu Lake" ], "sample_host_location_id": [], "data_size": "1.316 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4715363", "Number of Sequences": "73", "Longest Sequences (bp)": "437893", "N50 (bp)": "259392", "Gap Ratio (%)": "0.009374", "GCcontent (%)": "34.1", "Number of CDSs": "4015", "Average Protein Length": "334.6", "Coding Ratio (%)": "85.5", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1535, "total_fragments": 1538, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium aquariorum", "strain": "strain=IMCC34762", "accession": "GCA_003254745.1", "taxid": 2217670, "species_taxid": 2217670, "relation_to_type": "type", "validated": true, "ani": 86.5198, "matched_fragments": 1092, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 82.9532, "matched_fragments": 843, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquicola", "strain": "strain=DSM 100880", "accession": "GCA_003385115.1", "taxid": 1682742, "species_taxid": 1682742, "relation_to_type": "type", "validated": true, "ani": 81.4975, "matched_fragments": 839, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gilvum", "strain": "strain=EM1308", "accession": "GCA_000735535.1", "taxid": 1492737, "species_taxid": 1492737, "relation_to_type": "type", "validated": true, "ani": 81.4654, "matched_fragments": 704, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gilvum", "strain": "strain=EM1308", "accession": "GCA_001761465.1", "taxid": 1492737, "species_taxid": 1492737, "relation_to_type": "type", "validated": true, "ani": 81.4327, "matched_fragments": 752, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limicola", "strain": "strain=DSM 15094", "accession": "GCA_003634755.1", "taxid": 180441, "species_taxid": 180441, "relation_to_type": "type", "validated": true, "ani": 79.3144, "matched_fragments": 459, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 79.2608, "matched_fragments": 473, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 79.2081, "matched_fragments": 533, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 79.1811, "matched_fragments": 493, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 79.05, "matched_fragments": 487, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.5225, "matched_fragments": 360, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_002222045.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 78.4067, "matched_fragments": 454, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_001686925.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 78.4028, "matched_fragments": 457, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.3615, "matched_fragments": 390, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.2896, "matched_fragments": 424, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, 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