{
    "type": "genome",
    "identifier": "GCF_019355975.1",
    "organism": "Acinetobacter septicus",
    "title": "Acinetobacter septicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019355975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16357543",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "465797",
        "species_taxid": "465797",
        "organism_name": "Acinetobacter septicus",
        "infraspecific_name": "strain=FDAARGOS_1401",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/27",
        "asm_name": "ASM1935597v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_019355975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/355/975/GCF_019355975.1_ASM1935597v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3860318",
        "genome_size_ungapped": "3860218",
        "gc_percent": "40.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019355975.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3683",
        "protein_coding_gene_count": "3476",
        "non_coding_gene_count": "98",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-27",
    "dateModified": "2021-07-27",
    "datePublished": "2021-07-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acinetobacter septicus"
        ],
        "sample_taxid": [
            "465797"
        ],
        "sample_host_organism": [
            "N/A"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "1.089 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3860218",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "3490293",
        "N50 (bp)": "3490293",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.9",
        "Number of CDSs": "3618",
        "Average Protein Length": "307.8",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "21",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Acinetobacter septicus",
                "strain": "strain=FDAARGOS_1401",
                "accession": "GCA_019355975.1",
                "taxid": 465797,
                "species_taxid": 465797,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1279,
                "total_fragments": 1286,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Acinetobacter ursingii",
                "strain": "strain=CIP 107286",
                "accession": "GCA_000368825.1",
                "taxid": 108980,
                "species_taxid": 108980,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.4899,
                "matched_fragments": 1014,
                "total_fragments": 1286,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Acinetobacter ursingii",
                "strain": "strain=FDAARGOS_1095",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 97.4327,
                "matched_fragments": 1044,
                "total_fragments": 1286,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Acinetobacter guerrae",
                "strain": "strain=AC 1271",
                "accession": "GCA_009372255.1",
                "taxid": 1843371,
                "species_taxid": 1843371,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.4191,
                "matched_fragments": 908,
                "total_fragments": 1286,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acinetobacter ihumii",
                "strain": "strain=Marseille-P8049",
                "accession": "GCA_900625095.1",
                "taxid": 2483802,
                "species_taxid": 2483802,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.54,
                "matched_fragments": 815,
                "total_fragments": 1286,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acinetobacter johnsonii",
                "strain": "strain=NCTC10308",
                "accession": "GCA_900444855.1",
                "taxid": 40214,
                "species_taxid": 40214,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.0046,
                "matched_fragments": 411,
                "total_fragments": 1286,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acinetobacter haemolyticus",
                "strain": "strain=NCTC10305",
                "accession": "GCA_900444835.1",
                "taxid": 29430,
                "species_taxid": 29430,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5821,
                "matched_fragments": 437,
                "total_fragments": 1286,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000368825.1",
                "gtdb_species": "s__Acinetobacter ursingii",
                "ani": 97.5083,
                "matched_fragments": 1013,
                "total_fragments": 1286,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.69",
                "min_intra_species_ani": "96.95",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 69,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009372255.1",
                "gtdb_species": "s__Acinetobacter guerrae",
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                "matched_fragments": 907,
                "total_fragments": 1286,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "98.41",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_016624945.1",
                "gtdb_species": "s__Acinetobacter sp016624945",
                "ani": 85.1028,
                "matched_fragments": 850,
                "total_fragments": 1286,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900625095.1",
                "gtdb_species": "s__Acinetobacter sp900625095",
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                "matched_fragments": 815,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000368685.1",
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                "matched_fragments": 546,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter",
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                "num_clustered_genomes": 13,
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            },
            {
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                "gtdb_species": "s__Acinetobacter soli",
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                "num_clustered_genomes": 38,
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            },
            {
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            {
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            },
            {
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            {
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 0.652,
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    "_genome_taxon": [
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        "septicus"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}