{ "type": "genome", "identifier": "GCF_019375555.1", "organism": "Roseobacter insulae", "title": "Roseobacter insulae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019375555.1", "bioproject": "PRJNA224116", "biosample": "SAMN20236572", "wgs_master": "JAHXDN000000000.1", "refseq_category": "reference genome", "taxid": "2859783", "species_taxid": "2859783", "organism_name": "Roseobacter insulae", "infraspecific_name": "strain=YSTF-M11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/27", "asm_name": "ASM1937555v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_019375555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/375/555/GCF_019375555.1_ASM1937555v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4882487", "genome_size_ungapped": "4882487", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019375555.1-RS_2024_09_01", "annotation_date": "2024-09-01", "total_gene_count": "4794", "protein_coding_gene_count": "4691", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-27", "dateModified": "2021-07-27", "datePublished": "2021-07-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseobacter insulae" ], "sample_taxid": [ "2859783" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yeongheung island" ], "sample_host_location_id": [], "data_size": "1.375 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4882487", "Number of Sequences": "17", "Longest Sequences (bp)": "1271235", "N50 (bp)": "573784", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "4807", "Average Protein Length": "306.6", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseobacter cerasinus", "strain": "strain=AI77", "accession": "GCA_009811755.1", "taxid": 2602289, "species_taxid": 2602289, "relation_to_type": "type", "validated": true, "ani": 78.9409, "matched_fragments": 605, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseobacter denitrificans", "strain": "strain=DSM 7001", "accession": "GCA_900113215.1", "taxid": 2434, "species_taxid": 2434, "relation_to_type": "type", "validated": true, "ani": 78.2679, "matched_fragments": 424, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseobacter ponti", "strain": "strain=DSM 106830", "accession": "GCA_012932215.1", "taxid": 1891787, "species_taxid": 1891787, "relation_to_type": "type", "validated": true, "ani": 78.2615, "matched_fragments": 491, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseobacter denitrificans", "strain": "strain=OCh 114", "accession": "GCA_000014045.1", "taxid": 2434, "species_taxid": 2434, "relation_to_type": "type", "validated": true, "ani": 78.1943, "matched_fragments": 442, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.659, "matched_fragments": 413, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 77.6372, "matched_fragments": 358, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter sediminilitoris", "strain": "strain=JBTF-M27", "accession": "GCA_010667575.1", "taxid": 2698830, "species_taxid": 2698830, "relation_to_type": "type", "validated": true, "ani": 77.6017, "matched_fragments": 355, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter aestuariivivens", "strain": "strain=TSTF-M16", "accession": "GCA_014763045.1", "taxid": 2766981, "species_taxid": 2766981, "relation_to_type": "type", "validated": true, "ani": 77.5452, "matched_fragments": 319, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 77.5018, "matched_fragments": 279, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 77.4844, "matched_fragments": 325, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter mediterraneus", "strain": "strain=DSM 12244", "accession": "GCA_003054325.1", "taxid": 83219, "species_taxid": 83219, "relation_to_type": "type", "validated": true, "ani": 77.4175, "matched_fragments": 329, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita geojedonensis", "strain": "strain=DPG-138", "accession": "GCA_002115805.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 77.4142, "matched_fragments": 272, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita geojedonensis", "strain": "strain=DSM 29432", "accession": "GCA_003002975.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 77.3733, "matched_fragments": 277, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucae", "strain": "strain=NB-68", "accession": "GCA_000622365.1", "taxid": 1342302, "species_taxid": 1342302, "relation_to_type": "type", "validated": true, "ani": 77.2455, "matched_fragments": 290, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.2282, "matched_fragments": 323, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius gahaiensis", "strain": "strain=GH877", "accession": "GCA_011601345.1", "taxid": 2716691, "species_taxid": 2716691, "relation_to_type": "type", "validated": true, "ani": 77.0448, "matched_fragments": 208, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 76.5467, "matched_fragments": 221, 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"growth_tmp": 21.5, "optimum_tmp": null, "optimum_ph": null, "genome_size": 4535765.357, "gc_content": 57.368, "coding_genes": 4244.708, "rRNA16S_genes": 1.0, "tRNA_genes": 37.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Roseobacter", "insulae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }