{ "type": "genome", "identifier": "GCF_019391655.1", "organism": "Mucilaginibacter rivuli", "title": "Mucilaginibacter rivuli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankuk University of Foreign Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019391655.1", "bioproject": "PRJNA224116", "biosample": "SAMN20167675", "wgs_master": "JAHXPQ000000000.1", "refseq_category": "reference genome", "taxid": "2857527", "species_taxid": "2857527", "organism_name": "Mucilaginibacter rivuli", "infraspecific_name": "strain=HMF5004", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/28", "asm_name": "ASM1939165v1", "asm_submitter": "Hankuk University of Foreign Studies", "gbrs_paired_asm": "GCA_019391655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/391/655/GCF_019391655.1_ASM1939165v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4576780", "genome_size_ungapped": "4576780", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019391655.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3958", "protein_coding_gene_count": "3909", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-28", "dateModified": "2021-07-28", "datePublished": "2021-07-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter rivuli" ], "sample_taxid": [ "2857527" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yong-in" ], "sample_host_location_id": [], "data_size": "1.293 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4576780", "Number of Sequences": "14", "Longest Sequences (bp)": "929806", "N50 (bp)": "634664", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.4", "Number of CDSs": "3897", "Average Protein Length": "353.2", "Coding Ratio (%)": "90.2", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter gracilis", "strain": "strain=DSM 18602", "accession": "GCA_003633615.1", "taxid": 423350, "species_taxid": 423350, "relation_to_type": "type", "validated": true, "ani": 78.1442, "matched_fragments": 419, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter paludis", "strain": "strain=DSM 18603", "accession": "GCA_000166195.3", "taxid": 423351, "species_taxid": 423351, "relation_to_type": "type", "validated": true, "ani": 77.9613, "matched_fragments": 419, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter humi", "strain": "strain=S1162", "accession": "GCA_013087555.1", "taxid": 2732510, "species_taxid": 2732510, "relation_to_type": "type", "validated": true, "ani": 77.9552, "matched_fragments": 121, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=RG4-7", "accession": "GCA_001911425.1", "taxid": 1302689, "species_taxid": 1302689, "relation_to_type": "type", "validated": true, "ani": 77.6945, "matched_fragments": 230, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 77.6656, "matched_fragments": 244, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pankratovii", "strain": "strain=ZT4R22", "accession": "GCA_014773265.1", "taxid": 2772110, "species_taxid": 2772110, "relation_to_type": "type", "validated": true, "ani": 77.6581, "matched_fragments": 273, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 77.6444, "matched_fragments": 186, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=DSM 26907", "accession": "GCA_900116355.1", "taxid": 1302689, "species_taxid": 1302689, "relation_to_type": "type", "validated": true, "ani": 77.5716, "matched_fragments": 224, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 77.5675, "matched_fragments": 246, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter corticis", "strain": "strain=MAH-19", "accession": "GCA_007558865.1", "taxid": 2597670, "species_taxid": 2597670, "relation_to_type": "type", "validated": true, "ani": 77.5351, "matched_fragments": 249, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 77.4726, "matched_fragments": 250, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 77.445, "matched_fragments": 190, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 77.4432, "matched_fragments": 259, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=DSM 100995", "accession": "GCA_014196695.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.4268, "matched_fragments": 261, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.4223, "matched_fragments": 262, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=CCM 8625", "accession": "GCA_014635525.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.4092, "matched_fragments": 262, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter xinganensis", "strain": "strain=BJC16-A31", "accession": "GCA_002257585.1", "taxid": 1234841, "species_taxid": 1234841, "relation_to_type": "type", "validated": true, "ani": 77.4058, "matched_fragments": 196, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 77.3721, "matched_fragments": 218, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.3402, "matched_fragments": 203, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.3037, "matched_fragments": 250, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter limnophilus", "strain": "strain=YBJ-36", "accession": "GCA_004005815.1", "taxid": 1932778, "species_taxid": 1932778, "relation_to_type": "type", "validated": true, "ani": 77.2193, "matched_fragments": 182, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter auburnensis", "strain": "strain=DSM 28175", "accession": "GCA_002797815.1", "taxid": 1457233, "species_taxid": 1457233, "relation_to_type": "type", "validated": true, "ani": 77.1677, "matched_fragments": 201, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.0874, "matched_fragments": 194, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903893715.1", "gtdb_species": "s__Mucilaginibacter sp903893715", "ani": 79.2512, "matched_fragments": 596, "total_fragments": 1519, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003633615.1", "gtdb_species": "s__Mucilaginibacter gracilis", "ani": 78.133, "matched_fragments": 421, "total_fragments": 1519, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001705515.1", "gtdb_species": "s__Mucilaginibacter sp001705515", "ani": 77.984, "matched_fragments": 458, "total_fragments": 1519, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000166195.2", "gtdb_species": "s__Mucilaginibacter paludis", "ani": 77.9591, "matched_fragments": 418, "total_fragments": 1519, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001911425.1", "gtdb_species": "s__Mucilaginibacter polytrichastri", "ani": 77.681, "matched_fragments": 231, "total_fragments": 1519, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014376655.1", "gtdb_species": "s__Mucilaginibacter sp014376655", "ani": 77.6207, "matched_fragments": 170, "total_fragments": 1519, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004168255.1", "gtdb_species": "s__Mucilaginibacter terrigena", "ani": 77.461, "matched_fragments": 258, "total_fragments": 1519, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002257585.1", "gtdb_species": "s__Mucilaginibacter xinganensis", "ani": 77.4058, "matched_fragments": 196, "total_fragments": 1519, "gtdb_taxonomy": 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